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Journal Abstract Search

179 related items for PubMed ID: 37823438

  • 1. Hybrid Epigenomes Reveal Extensive Local Genetic Changes to Chromatin Accessibility Contribute to Divergence in Embryonic Gene Expression Between Species.
    Devens HR, Davidson PL, Byrne M, Wray GA.
    Mol Biol Evol; 2023 Nov 03; 40(11):. PubMed ID: 37823438
    [Abstract] [Full Text] [Related]

  • 2. Hybrid epigenomes reveal extensive local genetic changes to chromatin accessibility contribute to divergence in embryonic gene expression between species.
    Devens HR, Davidson PL, Byrne M, Wray GA.
    bioRxiv; 2023 Jan 04. PubMed ID: 36711588
    [Abstract] [Full Text] [Related]

  • 3. Evolutionary Changes in the Chromatin Landscape Contribute to Reorganization of a Developmental Gene Network During Rapid Life History Evolution in Sea Urchins.
    Davidson PL, Byrne M, Wray GA.
    Mol Biol Evol; 2022 Sep 01; 39(9):. PubMed ID: 35946348
    [Abstract] [Full Text] [Related]

  • 4. Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris.
    Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA.
    PLoS Biol; 2016 Mar 01; 14(3):e1002391. PubMed ID: 26943850
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  • 7. Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma.
    Wilson KA, Andrews ME, Raff RA.
    Evol Dev; 2005 Mar 01; 7(5):401-15. PubMed ID: 16174034
    [Abstract] [Full Text] [Related]

  • 8. Cell-type-specific cis-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells.
    Wang B, Starr AL, Fraser HB.
    Elife; 2024 Feb 15; 12():. PubMed ID: 38358392
    [Abstract] [Full Text] [Related]

  • 9. Major regulatory factors in the evolution of development: the roles of goosecoid and Msx in the evolution of the direct-developing sea urchin Heliocidaris erythrogramma.
    Wilson KA, Andrews ME, Rudolf Turner F, Raff RA.
    Evol Dev; 2005 Feb 15; 7(5):416-28. PubMed ID: 16174035
    [Abstract] [Full Text] [Related]

  • 10. Evolutionary changes in sites and timing of actin gene expression in embryos of the direct- and indirect-developing sea urchins, Heliocidaris erythrogramma and H. tuberculata.
    Kissinger JC, Raff RA.
    Dev Genes Evol; 1998 Apr 15; 208(2):82-93. PubMed ID: 9569349
    [Abstract] [Full Text] [Related]

  • 11. Identification and prediction of developmental enhancers in sea urchin embryos.
    Arenas-Mena C, Miljovska S, Rice EJ, Gurges J, Shashikant T, Wang Z, Ercan S, Danko CG.
    BMC Genomics; 2021 Oct 19; 22(1):751. PubMed ID: 34666684
    [Abstract] [Full Text] [Related]

  • 12. Evolution of the fibropellin gene family and patterns of fibropellin gene expression in sea urchin phylogeny.
    Bisgrove BW, Andrews ME, Raff RA.
    J Mol Evol; 1995 Jul 19; 41(1):34-45. PubMed ID: 7608987
    [Abstract] [Full Text] [Related]

  • 13. ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos.
    Magri MS, Voronov D, Ranđelović J, Cuomo C, Gómez-Skarmeta JL, Arnone MI.
    Methods Mol Biol; 2021 Jul 19; 2219():253-265. PubMed ID: 33074546
    [Abstract] [Full Text] [Related]

  • 14. Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation.
    Romano LA, Wray GA.
    Development; 2003 Sep 19; 130(17):4187-99. PubMed ID: 12874137
    [Abstract] [Full Text] [Related]

  • 15. Evolution of OTP-independent larval skeleton patterning in the direct-developing sea urchin, Heliocidaris erythrogramma.
    Zhou N, Wilson KA, Andrews ME, Kauffman JS, Raff RA.
    J Exp Zool B Mol Dev Evol; 2003 Dec 15; 300(1):58-71. PubMed ID: 14984035
    [Abstract] [Full Text] [Related]

  • 16. Mechanisms of evolutionary changes in timing, spatial expression, and mRNA processing in the msp130 gene in a direct-developing sea urchin, Heliocidaris erythrogramma.
    Klueg KM, Harkey MA, Raff RA.
    Dev Biol; 1997 Feb 01; 182(1):121-33. PubMed ID: 9028919
    [Abstract] [Full Text] [Related]

  • 17. Adaptive evolution of bindin in the genus Heliocidaris is correlated with the shift to direct development.
    Zigler KS, Raff EC, Popodi E, Raff RA, Lessios HA.
    Evolution; 2003 Oct 01; 57(10):2293-302. PubMed ID: 14628917
    [Abstract] [Full Text] [Related]

  • 18. Regulatory punctuated equilibrium and convergence in the evolution of developmental pathways in direct-developing sea urchins.
    Raff EC, Popodi EM, Kauffman JS, Sly BJ, Turner FR, Morris VB, Raff RA.
    Evol Dev; 2003 Oct 01; 5(5):478-93. PubMed ID: 12950627
    [Abstract] [Full Text] [Related]

  • 19. Divergence of ectodermal and mesodermal gene regulatory network linkages in early development of sea urchins.
    Erkenbrack EM.
    Proc Natl Acad Sci U S A; 2016 Nov 15; 113(46):E7202-E7211. PubMed ID: 27810959
    [Abstract] [Full Text] [Related]

  • 20. Cell type-specific cis-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells.
    Wang B, Starr AL, Fraser HB.
    bioRxiv; 2023 Sep 25. PubMed ID: 37292820
    [Abstract] [Full Text] [Related]

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