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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

382 related items for PubMed ID: 37940870

  • 1. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications.
    Herrick N, Walsh S.
    BMC Bioinformatics; 2023 Nov 08; 24(1):424. PubMed ID: 37940870
    [Abstract] [Full Text] [Related]

  • 2. Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data.
    Eller RJ, Janga SC, Walsh S.
    BMC Bioinformatics; 2019 Jun 28; 20(1):364. PubMed ID: 31253090
    [Abstract] [Full Text] [Related]

  • 3. Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.
    Baichoo S, Souilmi Y, Panji S, Botha G, Meintjes A, Hazelhurst S, Bendou H, Beste E, Mpangase PT, Souiai O, Alghali M, Yi L, O'Connor BD, Crusoe M, Armstrong D, Aron S, Joubert F, Ahmed AE, Mbiyavanga M, Heusden PV, Magosi LE, Zermeno J, Mainzer LS, Fadlelmola FM, Jongeneel CV, Mulder N.
    BMC Bioinformatics; 2018 Nov 29; 19(1):457. PubMed ID: 30486782
    [Abstract] [Full Text] [Related]

  • 4. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework.
    Ahmad T, Ahmed N, Al-Ars Z, Hofstee HP.
    BMC Genomics; 2020 Nov 18; 21(Suppl 10):683. PubMed ID: 33208101
    [Abstract] [Full Text] [Related]

  • 5. Scalable Workflows and Reproducible Data Analysis for Genomics.
    Strozzi F, Janssen R, Wurmus R, Crusoe MR, Githinji G, Di Tommaso P, Belhachemi D, Möller S, Smant G, de Ligt J, Prins P.
    Methods Mol Biol; 2019 Nov 18; 1910():723-745. PubMed ID: 31278683
    [Abstract] [Full Text] [Related]

  • 6. Managing genomic variant calling workflows with Swift/T.
    Ahmed AE, Heldenbrand J, Asmann Y, Fadlelmola FM, Katz DS, Kendig K, Kendzior MC, Li T, Ren Y, Rodriguez E, Weber MR, Wozniak JM, Zermeno J, Mainzer LS.
    PLoS One; 2019 Nov 18; 14(7):e0211608. PubMed ID: 31287816
    [Abstract] [Full Text] [Related]

  • 7. DolphinNext: a distributed data processing platform for high throughput genomics.
    Yukselen O, Turkyilmaz O, Ozturk AR, Garber M, Kucukural A.
    BMC Genomics; 2020 Apr 19; 21(1):310. PubMed ID: 32306927
    [Abstract] [Full Text] [Related]

  • 8. scalepopgen: Bioinformatic Workflow Resources Implemented in Nextflow for Comprehensive Population Genomic Analyses.
    Upadhyay M, Pogorevc N, Medugorac I.
    Mol Biol Evol; 2024 Apr 02; 41(4):. PubMed ID: 38507648
    [Abstract] [Full Text] [Related]

  • 9. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
    Welzel M, Lange A, Heider D, Schwarz M, Freisleben B, Jensen M, Boenigk J, Beisser D.
    BMC Bioinformatics; 2020 Nov 16; 21(1):526. PubMed ID: 33198651
    [Abstract] [Full Text] [Related]

  • 10. Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.
    Hafez AI, Soriano B, Elsayed AA, Futami R, Ceprian R, Ramos-Ruiz R, Martinez G, Roig FJ, Torres-Font MA, Naya-Catala F, Calduch-Giner JA, Trilla-Fuertes L, Gamez-Pozo A, Arnau V, Sempere-Luna JM, Perez-Sanchez J, Gabaldon T, Llorens C.
    Genes (Basel); 2023 Jan 19; 14(2):. PubMed ID: 36833195
    [Abstract] [Full Text] [Related]

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  • 13. CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline.
    Miller DB, Piccolo SR.
    F1000Res; 2020 Jan 19; 9():1211. PubMed ID: 33680433
    [Abstract] [Full Text] [Related]

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  • 15. Closha: bioinformatics workflow system for the analysis of massive sequencing data.
    Ko G, Kim PG, Yoon J, Han G, Park SJ, Song W, Lee B.
    BMC Bioinformatics; 2018 Feb 19; 19(Suppl 1):43. PubMed ID: 29504905
    [Abstract] [Full Text] [Related]

  • 16. Sequanix: a dynamic graphical interface for Snakemake workflows.
    Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T.
    Bioinformatics; 2018 Jun 01; 34(11):1934-1936. PubMed ID: 29361152
    [Abstract] [Full Text] [Related]

  • 17. Kronos: a workflow assembler for genome analytics and informatics.
    Taghiyar MJ, Rosner J, Grewal D, Grande BM, Aniba R, Grewal J, Boutros PC, Morin RD, Bashashati A, Shah SP.
    Gigascience; 2017 Jul 01; 6(7):1-10. PubMed ID: 28655203
    [Abstract] [Full Text] [Related]

  • 18. VC@Scale: Scalable and high-performance variant calling on cluster environments.
    Ahmad T, Al Ars Z, Hofstee HP.
    Gigascience; 2021 Sep 07; 10(9):. PubMed ID: 34494101
    [Abstract] [Full Text] [Related]

  • 19. JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.
    Ahmed Z, Renart EG, Mishra D, Zeeshan S.
    FEBS Open Bio; 2021 Sep 07; 11(9):2441-2452. PubMed ID: 34370400
    [Abstract] [Full Text] [Related]

  • 20. SNP-SVant: A Computational Workflow to Predict and Annotate Genomic Variants in Organisms Lacking Benchmarked Variants.
    Gunasekaran D, Ardell DH, Nobile CJ.
    Curr Protoc; 2024 May 07; 4(5):e1046. PubMed ID: 38717471
    [Abstract] [Full Text] [Related]

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