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Journal Abstract Search

153 related items for PubMed ID: 37971305

  • 1. Cistrome Data Browser: integrated search, analysis and visualization of chromatin data.
    Taing L, Dandawate A, L'Yi S, Gehlenborg N, Brown M, Meyer CA.
    Nucleic Acids Res; 2024 Jan 05; 52(D1):D61-D66. PubMed ID: 37971305
    [Abstract] [Full Text] [Related]

  • 2. Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.
    Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS.
    Nucleic Acids Res; 2019 Jan 08; 47(D1):D729-D735. PubMed ID: 30462313
    [Abstract] [Full Text] [Related]

  • 3. Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.
    Mei S, Qin Q, Wu Q, Sun H, Zheng R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA, Liu XS.
    Nucleic Acids Res; 2017 Jan 04; 45(D1):D658-D662. PubMed ID: 27789702
    [Abstract] [Full Text] [Related]

  • 4. CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse.
    Wang Q, Huang J, Sun H, Liu J, Wang J, Wang Q, Qin Q, Mei S, Zhao C, Yang X, Liu XS, Zhang Y.
    Nucleic Acids Res; 2014 Jan 04; 42(Database issue):D450-8. PubMed ID: 24253304
    [Abstract] [Full Text] [Related]

  • 5. Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.
    L'Yi S, Keller MS, Dandawate A, Taing L, Chen CH, Brown M, Meyer CA, Gehlenborg N.
    Bioinformatics; 2023 Feb 03; 39(2):. PubMed ID: 36688700
    [Abstract] [Full Text] [Related]

  • 6. TFmapper: A Tool for Searching Putative Factors Regulating Gene Expression Using ChIP-seq Data.
    Zeng J, Li G.
    Int J Biol Sci; 2018 Feb 03; 14(12):1724-1731. PubMed ID: 30416387
    [Abstract] [Full Text] [Related]

  • 7. Cistrome: an integrative platform for transcriptional regulation studies.
    Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS.
    Genome Biol; 2011 Aug 22; 12(8):R83. PubMed ID: 21859476
    [Abstract] [Full Text] [Related]

  • 8. CistromeFinder for ChIP-seq and DNase-seq data reuse.
    Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS.
    Bioinformatics; 2013 May 15; 29(10):1352-4. PubMed ID: 23508969
    [Abstract] [Full Text] [Related]

  • 9. Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.
    Wang S, Zang C, Xiao T, Fan J, Mei S, Qin Q, Wu Q, Li X, Xu K, He HH, Brown M, Meyer CA, Liu XS.
    Genome Res; 2016 Oct 15; 26(10):1417-1429. PubMed ID: 27466232
    [Abstract] [Full Text] [Related]

  • 10. Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer.
    Mei S, Meyer CA, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Shih C, Brown M, Zang C, Liu XS.
    Cancer Res; 2017 Nov 01; 77(21):e19-e22. PubMed ID: 29092931
    [Abstract] [Full Text] [Related]

  • 11. Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.
    Mortazavi A, Pepke S, Jansen C, Marinov GK, Ernst J, Kellis M, Hardison RC, Myers RM, Wold BJ.
    Genome Res; 2013 Dec 01; 23(12):2136-48. PubMed ID: 24170599
    [Abstract] [Full Text] [Related]

  • 12. ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.
    Zhou KR, Liu S, Sun WJ, Zheng LL, Zhou H, Yang JH, Qu LH.
    Nucleic Acids Res; 2017 Jan 04; 45(D1):D43-D50. PubMed ID: 27924033
    [Abstract] [Full Text] [Related]

  • 13. Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.
    Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS.
    Genome Biol; 2020 Feb 07; 21(1):32. PubMed ID: 32033573
    [Abstract] [Full Text] [Related]

  • 14. Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.
    Li S, Wan C, Zheng R, Fan J, Dong X, Meyer CA, Liu XS.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W206-W211. PubMed ID: 31053864
    [Abstract] [Full Text] [Related]

  • 15. Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets.
    Zambelli F, Prazzoli GM, Pesole G, Pavesi G.
    Nucleic Acids Res; 2012 Jul 02; 40(Web Server issue):W510-5. PubMed ID: 22669907
    [Abstract] [Full Text] [Related]

  • 16. hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets.
    Zhang Q, Liu W, Zhang HM, Xie GY, Miao YR, Xia M, Guo AY.
    Genomics Proteomics Bioinformatics; 2020 Apr 02; 18(2):120-128. PubMed ID: 32858223
    [Abstract] [Full Text] [Related]

  • 17. User-Friendly and Interactive Analysis of ChIP-Seq Data Using EaSeq.
    Lerdrup M, Hansen K.
    Methods Mol Biol; 2020 Apr 02; 2117():35-63. PubMed ID: 31960371
    [Abstract] [Full Text] [Related]

  • 18. CASSys: an integrated software-system for the interactive analysis of ChIP-seq data.
    Alawi M, Kurtz S, Beckstette M.
    J Integr Bioinform; 2011 Jun 21; 8(2):155. PubMed ID: 21690655
    [Abstract] [Full Text] [Related]

  • 19. The Innate Immune Database (IIDB).
    Korb M, Rust AG, Thorsson V, Battail C, Li B, Hwang D, Kennedy KA, Roach JC, Rosenberger CM, Gilchrist M, Zak D, Johnson C, Marzolf B, Aderem A, Shmulevich I, Bolouri H.
    BMC Immunol; 2008 Mar 05; 9():7. PubMed ID: 18321385
    [Abstract] [Full Text] [Related]

  • 20. ENCODE whole-genome data in the UCSC genome browser (2011 update).
    Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ.
    Nucleic Acids Res; 2011 Jan 05; 39(Database issue):D871-5. PubMed ID: 21037257
    [Abstract] [Full Text] [Related]

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