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Journal Abstract Search

114 related items for PubMed ID: 38599390

  • 1. Comparative evaluation of analytical pipelines for illumina short- and nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities.
    Ota Y, Yasunaga K, Mahazu S, Prah I, Nagai S, Hayashi T, Suzuki M, Yoshida M, Hoshino Y, Akeda Y, Suzuki T, Gu Y, Saito R.
    J Microbiol Methods; 2024 Jun; 221():106929. PubMed ID: 38599390
    [Abstract] [Full Text] [Related]

  • 2. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
    Earl JP, Adappa ND, Krol J, Bhat AS, Balashov S, Ehrlich RL, Palmer JN, Workman AD, Blasetti M, Sen B, Hammond J, Cohen NA, Ehrlich GD, Mell JC.
    Microbiome; 2018 Oct 23; 6(1):190. PubMed ID: 30352611
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  • 5. Short-read full-length 16S rRNA amplicon sequencing for characterisation of the respiratory bacteriome of captive and free-ranging African elephants (Loxodonta africana).
    Martin LC, O'Hare MA, Ghielmetti G, Twesigomwe D, Kerr TJ, Gumbo R, Buss PE, Kitchin N, Hemmings SMJ, Miller MA, Goosen WJ.
    Sci Rep; 2024 Jun 26; 14(1):14768. PubMed ID: 38926469
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  • 6. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
    Xue Z, Kable ME, Marco ML.
    mSphere; 2018 Oct 17; 3(5):. PubMed ID: 30333179
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  • 7. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
    Ogier JC, Pagès S, Galan M, Barret M, Gaudriault S.
    BMC Microbiol; 2019 Jul 29; 19(1):171. PubMed ID: 31357928
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  • 12. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
    Heikema AP, Horst-Kreft D, Boers SA, Jansen R, Hiltemann SD, de Koning W, Kraaij R, de Ridder MAJ, van Houten CB, Bont LJ, Stubbs AP, Hays JP.
    Genes (Basel); 2020 Sep 21; 11(9):. PubMed ID: 32967250
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  • 13. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing.
    Shin J, Lee S, Go MJ, Lee SY, Kim SC, Lee CH, Cho BK.
    Sci Rep; 2016 Jul 14; 6():29681. PubMed ID: 27411898
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  • 14. A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.
    Whelan FJ, Surette MG.
    Microbiome; 2017 Aug 14; 5(1):100. PubMed ID: 28807046
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  • 15. NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.
    Calus ST, Ijaz UZ, Pinto AJ.
    Gigascience; 2018 Dec 01; 7(12):. PubMed ID: 30476081
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  • 16. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
    Abellan-Schneyder I, Matchado MS, Reitmeier S, Sommer A, Sewald Z, Baumbach J, List M, Neuhaus K.
    mSphere; 2021 Feb 24; 6(1):. PubMed ID: 33627512
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  • 17. Optimized bacterial community characterization through full-length 16S rRNA gene sequencing utilizing MinION nanopore technology.
    Bertolo A, Valido E, Stoyanov J.
    BMC Microbiol; 2024 Feb 16; 24(1):58. PubMed ID: 38365589
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  • 18. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence.
    Seol D, Lim JS, Sung S, Lee YH, Jeong M, Cho S, Kwak W, Kim H.
    Microbiol Spectr; 2022 Apr 27; 10(2):e0201721. PubMed ID: 35352997
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  • 19. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities.
    Schriefer AE, Cliften PF, Hibberd MC, Sawyer C, Brown-Kennerly V, Burcea L, Klotz E, Crosby SD, Gordon JI, Head RD.
    J Microbiol Methods; 2018 Nov 27; 154():6-13. PubMed ID: 30273610
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  • 20. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB.
    Gigascience; 2017 Mar 01; 6(3):1-10. PubMed ID: 28327976
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