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197 related items for PubMed ID: 38746211

  • 1. Observing one-divalent-metal-ion dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
    Chang C, Zhou G, Gao Y.
    bioRxiv; 2024 Jul 11. PubMed ID: 38746211
    [Abstract] [Full Text] [Related]

  • 2. Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
    Chang C, Zhou G, Gao Y.
    Elife; 2024 Aug 14; 13():. PubMed ID: 39141555
    [Abstract] [Full Text] [Related]

  • 3. Elucidation of the catalytic mechanism of a single-metal dependent homing endonuclease using QM and QM/MM approaches: the case study of I-PpoI.
    Kaur R, Frederickson A, Wetmore SD.
    Phys Chem Chem Phys; 2024 Mar 13; 26(11):8919-8931. PubMed ID: 38426850
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  • 4. Crystal structural analysis and metal-dependent stability and activity studies of the ColE7 endonuclease domain in complex with DNA/Zn2+ or inhibitor/Ni2+.
    Doudeva LG, Huang H, Hsia KC, Shi Z, Li CL, Shen Y, Cheng YS, Yuan HS.
    Protein Sci; 2006 Feb 13; 15(2):269-80. PubMed ID: 16434744
    [Abstract] [Full Text] [Related]

  • 5. Structural insights into the mechanism of nuclease A, a betabeta alpha metal nuclease from Anabaena.
    Ghosh M, Meiss G, Pingoud A, London RE, Pedersen LC.
    J Biol Chem; 2005 Jul 29; 280(30):27990-7. PubMed ID: 15897201
    [Abstract] [Full Text] [Related]

  • 6. Metal ions and phosphate binding in the H-N-H motif: crystal structures of the nuclease domain of ColE7/Im7 in complex with a phosphate ion and different divalent metal ions.
    Sui MJ, Tsai LC, Hsia KC, Doudeva LG, Ku WY, Han GW, Yuan HS.
    Protein Sci; 2002 Dec 29; 11(12):2947-57. PubMed ID: 12441392
    [Abstract] [Full Text] [Related]

  • 7. An equivalent metal ion in one- and two-metal-ion catalysis.
    Yang W.
    Nat Struct Mol Biol; 2008 Nov 29; 15(11):1228-31. PubMed ID: 18953336
    [Abstract] [Full Text] [Related]

  • 8. Structure-based analysis of the metal-dependent mechanism of H-N-H endonucleases.
    Maté MJ, Kleanthous C.
    J Biol Chem; 2004 Aug 13; 279(33):34763-9. PubMed ID: 15190054
    [Abstract] [Full Text] [Related]

  • 9. Insights into Two-Metal-Ion Catalytic Mechanism of Cap-Snatching Endonuclease of Ebinur Lake Virus in Bunyavirales.
    Kuang W, Zhang H, Cai Y, Zhang G, Deng F, Li H, Hu Z, Guo Y, Wang M, Zhou Y, Gong P.
    J Virol; 2022 Mar 23; 96(6):e0208521. PubMed ID: 35044209
    [Abstract] [Full Text] [Related]

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  • 12. Mutability of an HNH nuclease imidazole general base and exchange of a deprotonation mechanism.
    Eastberg JH, Eklund J, Monnat R, Stoddard BL.
    Biochemistry; 2007 Jun 19; 46(24):7215-25. PubMed ID: 17516660
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  • 13. [A comparative structure-function analysis and molecular mechanism of action of endonucleases from Serratia marcescens and Physarum polycephalum].
    Shliapnikov SV, Lunin VV, Blagova EV, Abaturov LV, Perbandt M, Betzel C, Mikhaĭlov AM.
    Bioorg Khim; 2002 Jun 19; 28(1):23-31. PubMed ID: 11875970
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  • 18. Chemical mechanism of DNA cleavage by the homing endonuclease I-PpoI.
    Mannino SJ, Jenkins CL, Raines RT.
    Biochemistry; 1999 Dec 07; 38(49):16178-86. PubMed ID: 10587440
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  • 19. Cleavage experiments with deoxythymidine 3',5'-bis-(p-nitrophenyl phosphate) suggest that the homing endonuclease I-PpoI follows the same mechanism of phosphodiester bond hydrolysis as the non-specific Serratia nuclease.
    Friedhoff P, Franke I, Krause KL, Pingoud A.
    FEBS Lett; 1999 Jan 25; 443(2):209-14. PubMed ID: 9989607
    [Abstract] [Full Text] [Related]

  • 20. Kinetic Mechanism of DNA Polymerases: Contributions of Conformational Dynamics and a Third Divalent Metal Ion.
    Raper AT, Reed AJ, Suo Z.
    Chem Rev; 2018 Jun 27; 118(12):6000-6025. PubMed ID: 29863852
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