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Journal Abstract Search

176 related items for PubMed ID: 38843147

  • 1. Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry.
    Dippenaar A, Costa Conceição E, Wells F, Loubser J, Mann B, De Diego Fuertes M, Rennie V, Warren RM, Van Rie A.
    PLoS One; 2024; 19(6):e0303938. PubMed ID: 38843147
    [Abstract] [Full Text] [Related]

  • 2. Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
    Bogaerts B, Van den Bossche A, Verhaegen B, Delbrassinne L, Mattheus W, Nouws S, Godfroid M, Hoffman S, Roosens NHC, De Keersmaecker SCJ, Vanneste K.
    J Clin Microbiol; 2024 May 08; 62(5):e0157623. PubMed ID: 38441926
    [Abstract] [Full Text] [Related]

  • 3. Do we still need Illumina sequencing data? Evaluating Oxford Nanopore Technologies R10.4.1 flow cells and the Rapid v14 library prep kit for Gram negative bacteria whole genome assemblies.
    Lerminiaux N, Fakharuddin K, Mulvey MR, Mataseje L.
    Can J Microbiol; 2024 May 01; 70(5):178-189. PubMed ID: 38354391
    [Abstract] [Full Text] [Related]

  • 4. Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction.
    Sanderson ND, Kapel N, Rodger G, Webster H, Lipworth S, Street TL, Peto T, Crook D, Stoesser N.
    Microb Genom; 2023 Jan 01; 9(1):. PubMed ID: 36748454
    [Abstract] [Full Text] [Related]

  • 5. Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing.
    Sanderson ND, Hopkins KMV, Colpus M, Parker M, Lipworth S, Crook D, Stoesser N.
    Microb Genom; 2024 May 01; 10(5):. PubMed ID: 38713194
    [Abstract] [Full Text] [Related]

  • 6. Droplet based whole genome amplification for sequencing minute amounts of purified Mycobacterium tuberculosis DNA.
    Dippenaar A, Ismail N, Heupink TH, Grobbelaar M, Loubser J, Van Rie A, Warren RM.
    Sci Rep; 2024 Apr 30; 14(1):9931. PubMed ID: 38689002
    [Abstract] [Full Text] [Related]

  • 7. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB.
    Gigascience; 2017 Mar 01; 6(3):1-10. PubMed ID: 28327976
    [Abstract] [Full Text] [Related]

  • 8. Recovery of small plasmid sequences via Oxford Nanopore sequencing.
    Wick RR, Judd LM, Wyres KL, Holt KE.
    Microb Genom; 2021 Aug 01; 7(8):. PubMed ID: 34431763
    [Abstract] [Full Text] [Related]

  • 9. The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.
    Zhang T, Li H, Ma S, Cao J, Liao H, Huang Q, Chen W.
    Appl Environ Microbiol; 2023 Oct 31; 89(10):e0060523. PubMed ID: 37800969
    [Abstract] [Full Text] [Related]

  • 10. Nanopore-based targeted sequencing test for direct tuberculosis identification, genotyping, and detection of drug resistance mutations: a side-by-side comparison of targeted next-generation sequencing technologies.
    Cabibbe AM, Moghaddasi K, Batignani V, Morgan GSK, Di Marco F, Cirillo DM.
    J Clin Microbiol; 2024 Oct 16; 62(10):e0081524. PubMed ID: 39240079
    [Abstract] [Full Text] [Related]

  • 11. Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis.
    Linde J, Brangsch H, Hölzer M, Thomas C, Elschner MC, Melzer F, Tomaso H.
    BMC Genomics; 2023 May 12; 24(1):258. PubMed ID: 37173617
    [Abstract] [Full Text] [Related]

  • 12. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
    Heikema AP, Horst-Kreft D, Boers SA, Jansen R, Hiltemann SD, de Koning W, Kraaij R, de Ridder MAJ, van Houten CB, Bont LJ, Stubbs AP, Hays JP.
    Genes (Basel); 2020 Sep 21; 11(9):. PubMed ID: 32967250
    [Abstract] [Full Text] [Related]

  • 13. Use of Whole Genome Sequencing for Mycobacterium tuberculosis Complex Antimicrobial Susceptibility Testing.
    Mohr V, Sonnenkalb L, Utpatel C, Barilar I, Diricks M, Dreyer V, Niemann S, Kohl TA, Merker M.
    Methods Mol Biol; 2024 Sep 21; 2833():185-193. PubMed ID: 38949711
    [Abstract] [Full Text] [Related]

  • 14. ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of Drosophila melanogaster.
    Bologa AM, Stoica I, Ratiu AC, Constantin ND, Ecovoiu AA.
    Int J Mol Sci; 2022 Nov 28; 23(23):. PubMed ID: 36499217
    [Abstract] [Full Text] [Related]

  • 15. Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs.
    Phelan JE, O'Sullivan DM, Machado D, Ramos J, Oppong YEA, Campino S, O'Grady J, McNerney R, Hibberd ML, Viveiros M, Huggett JF, Clark TG.
    Genome Med; 2019 Jun 24; 11(1):41. PubMed ID: 31234910
    [Abstract] [Full Text] [Related]

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  • 17. Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2.
    Zee A, Deng DZQ, Adams M, Schimke KD, Corbett-Detig R, Russell SL, Zhang X, Schmitz RJ, Vollmers C.
    Genome Res; 2022 Jun 24; 32(11-12):2092-2106. PubMed ID: 36351772
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  • 19. Evaluation of real-time nanopore sequencing for Salmonella serotype prediction.
    Xu F, Ge C, Luo H, Li S, Wiedmann M, Deng X, Zhang G, Stevenson A, Baker RC, Tang S.
    Food Microbiol; 2020 Aug 24; 89():103452. PubMed ID: 32138998
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