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Journal Abstract Search

140 related items for PubMed ID: 38844045

  • 1. Structure-guided Evolutionary Analysis of Interactome Network Rewiring at Single Residue Resolution in Yeasts.
    Pollet L, Xia Y.
    J Mol Biol; 2024 Aug 15; 436(16):168641. PubMed ID: 38844045
    [Abstract] [Full Text] [Related]

  • 2. Structural Determinants of Yeast Protein-Protein Interaction Interface Evolution at the Residue Level.
    Pollet L, Lambourne L, Xia Y.
    J Mol Biol; 2022 Oct 15; 434(19):167750. PubMed ID: 35850298
    [Abstract] [Full Text] [Related]

  • 3. Interactome evolution: insights from genome-wide analyses of protein-protein interactions.
    Ghadie MA, Coulombe-Huntington J, Xia Y.
    Curr Opin Struct Biol; 2018 Jun 15; 50():42-48. PubMed ID: 29112911
    [Abstract] [Full Text] [Related]

  • 4. A large accessory protein interactome is rewired across environments.
    Liu Z, Miller D, Li F, Liu X, Levy SF.
    Elife; 2020 Sep 14; 9():. PubMed ID: 32924934
    [Abstract] [Full Text] [Related]

  • 5. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
    Vo TV, Das J, Meyer MJ, Cordero NA, Akturk N, Wei X, Fair BJ, Degatano AG, Fragoza R, Liu LG, Matsuyama A, Trickey M, Horibata S, Grimson A, Yamano H, Yoshida M, Roth FP, Pleiss JA, Xia Y, Yu H.
    Cell; 2016 Jan 14; 164(1-2):310-323. PubMed ID: 26771498
    [Abstract] [Full Text] [Related]

  • 6. No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly.
    Jordan IK, Wolf YI, Koonin EV.
    BMC Evol Biol; 2003 Jan 06; 3():1. PubMed ID: 12515583
    [Abstract] [Full Text] [Related]

  • 7. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways.
    Das J, Vo TV, Wei X, Mellor JC, Tong V, Degatano AG, Wang X, Wang L, Cordero NA, Kruer-Zerhusen N, Matsuyama A, Pleiss JA, Lipkin SM, Yoshida M, Roth FP, Yu H.
    Sci Signal; 2013 May 21; 6(276):ra38. PubMed ID: 23695164
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  • 11. Assessment of high-confidence protein-protein interactome in yeast.
    Karagoz K, Arga KY.
    Comput Biol Chem; 2013 Aug 21; 45():1-8. PubMed ID: 23608186
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  • 12. Structural mapping of protein interactions reveals differences in evolutionary pressures correlated to mRNA level and protein abundance.
    Eames M, Kortemme T.
    Structure; 2007 Nov 21; 15(11):1442-51. PubMed ID: 17997970
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  • 14. Predicting Protein-Protein Interactions via Random Ferns with Evolutionary Matrix Representation.
    Li Y, Wang Z, You ZH, Li LP, Hu X.
    Comput Math Methods Med; 2022 Nov 21; 2022():7191684. PubMed ID: 35242211
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  • 15. Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.
    Zhou H, Wong L.
    BMC Genomics; 2011 Nov 30; 12 Suppl 3(Suppl 3):S20. PubMed ID: 22369691
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  • 16. Quantitative residue-level structure-evolution relationships in the yeast membrane proteome.
    Franzosa EA, Xue R, Xia Y.
    Genome Biol Evol; 2013 Nov 30; 5(4):734-44. PubMed ID: 23512408
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  • 18. t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks.
    Zhu L, You ZH, Huang DS, Wang B.
    PLoS One; 2013 Nov 30; 8(4):e58368. PubMed ID: 23560036
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  • 19. Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication.
    Gagnon-Arsenault I, Marois Blanchet FC, Rochette S, Diss G, Dubé AK, Landry CR.
    J Proteomics; 2013 Apr 09; 81():112-25. PubMed ID: 23063722
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  • 20. Inferring homologous protein-protein interactions through pair position specific scoring matrix.
    Lin CY, Chen YC, Lo YS, Yang JM.
    BMC Bioinformatics; 2013 Apr 09; 14 Suppl 2(Suppl 2):S11. PubMed ID: 23367879
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