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Pubmed for Handhelds

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Journal Abstract Search

144 related items for PubMed ID: 38960860

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  • 3. ODGI: understanding pangenome graphs.
    Guarracino A, Heumos S, Nahnsen S, Prins P, Garrison E.
    Bioinformatics; 2022 Jun 27; 38(13):3319-3326. PubMed ID: 35552372
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  • 5. Panacus: fast and exact pangenome growth and core size estimation.
    Parmigiani L, Garrison E, Stoye J, Marschall T, Doerr D.
    bioRxiv; 2024 Jun 12. PubMed ID: 38915671
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  • 7. Cluster-efficient pangenome graph construction with nf-core/pangenome.
    Heumos S, Heuer ML, Hanssen F, Heumos L, Guarracino A, Heringer P, Ehmele P, Prins P, Garrison E, Nahnsen S.
    Bioinformatics; 2024 Nov 01; 40(11):. PubMed ID: 39400346
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  • 8. PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
    Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D.
    PLoS Comput Biol; 2020 Mar 01; 16(3):e1007732. PubMed ID: 32191703
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  • 11. GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
    Tognon M, Bonnici V, Garrison E, Giugno R, Pinello L.
    PLoS Comput Biol; 2021 Sep 01; 17(9):e1009444. PubMed ID: 34570769
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  • 13. Tugging graphs faster: efficiently modifying path-preserving hierarchies for browsing paths.
    Archambault D, Munzner T, Auber D.
    IEEE Trans Vis Comput Graph; 2011 Mar 01; 17(3):276-89. PubMed ID: 20421680
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  • 15. GraphAligner: rapid and versatile sequence-to-graph alignment.
    Rautiainen M, Marschall T.
    Genome Biol; 2020 Sep 24; 21(1):253. PubMed ID: 32972461
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  • 16. Comparing methods for constructing and representing human pangenome graphs.
    Andreace F, Lechat P, Dufresne Y, Chikhi R.
    Genome Biol; 2023 Nov 30; 24(1):274. PubMed ID: 38037131
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  • 18. Coordinates and intervals in graph-based reference genomes.
    Rand KD, Grytten I, Nederbragt AJ, Storvik GO, Glad IK, Sandve GK.
    BMC Bioinformatics; 2017 May 18; 18(1):263. PubMed ID: 28521770
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  • 19. Pangenome Graphs.
    Eizenga JM, Novak AM, Sibbesen JA, Heumos S, Ghaffaari A, Hickey G, Chang X, Seaman JD, Rounthwaite R, Ebler J, Rautiainen M, Garg S, Paten B, Marschall T, Sirén J, Garrison E.
    Annu Rev Genomics Hum Genet; 2020 Aug 31; 21():139-162. PubMed ID: 32453966
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  • 20. Haplotype-aware sequence alignment to pangenome graphs.
    Chandra G, Gibney D, Jain C.
    Genome Res; 2024 Oct 11; 34(9):1265-1275. PubMed ID: 39013594
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