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Journal Abstract Search

158 related items for PubMed ID: 39051117

  • 1. TUnA: an uncertainty-aware transformer model for sequence-based protein-protein interaction prediction.
    Ko YS, Parkinson J, Liu C, Wang W.
    Brief Bioinform; 2024 Jul 25; 25(5):. PubMed ID: 39051117
    [Abstract] [Full Text] [Related]

  • 2. Exploring the Knowledge of an Outstanding Protein to Protein Interaction Transformer.
    Yang S, Cheng P, Liu Y, Feng D, Wang S.
    IEEE/ACM Trans Comput Biol Bioinform; 2024 Jul 25; 21(5):1287-1298. PubMed ID: 38536676
    [Abstract] [Full Text] [Related]

  • 3. Prediction of Protein-Protein Interaction Sites with Machine-Learning-Based Data-Cleaning and Post-Filtering Procedures.
    Liu GH, Shen HB, Yu DJ.
    J Membr Biol; 2016 Apr 25; 249(1-2):141-53. PubMed ID: 26563228
    [Abstract] [Full Text] [Related]

  • 4. Revolutionizing protein-protein interaction prediction with deep learning.
    Zhang J, Durham J, Qian Cong.
    Curr Opin Struct Biol; 2024 Apr 25; 85():102775. PubMed ID: 38330793
    [Abstract] [Full Text] [Related]

  • 5. Bayesian inference for genomic data integration reduces misclassification rate in predicting protein-protein interactions.
    Xing C, Dunson DB.
    PLoS Comput Biol; 2011 Jul 25; 7(7):e1002110. PubMed ID: 21829334
    [Abstract] [Full Text] [Related]

  • 6. Prediction of Protein-Protein Interaction via co-occurring Aligned Pattern Clusters.
    Sze-To A, Fung S, Lee EA, Wong AKC.
    Methods; 2016 Nov 01; 110():26-34. PubMed ID: 27476008
    [Abstract] [Full Text] [Related]

  • 7. Protein-Protein Interaction Prediction via Structure-Based Deep Learning.
    Liu Y, Liu Y, Li Z.
    Proteins; 2024 Nov 01; 92(11):1287-1296. PubMed ID: 38923590
    [Abstract] [Full Text] [Related]

  • 8. DL-PPI: a method on prediction of sequenced protein-protein interaction based on deep learning.
    Wu J, Liu B, Zhang J, Wang Z, Li J.
    BMC Bioinformatics; 2023 Dec 14; 24(1):473. PubMed ID: 38097937
    [Abstract] [Full Text] [Related]

  • 9. DualNetGO: a dual network model for protein function prediction via effective feature selection.
    Chen Z, Luo Q.
    Bioinformatics; 2024 Jul 01; 40(7):. PubMed ID: 38963311
    [Abstract] [Full Text] [Related]

  • 10. Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexes.
    Xia S, Li D, Deng X, Liu Z, Zhu H, Liu Y, Li D.
    Brief Bioinform; 2024 May 23; 25(4):. PubMed ID: 38851299
    [Abstract] [Full Text] [Related]

  • 11. DeepHomo2.0: improved protein-protein contact prediction of homodimers by transformer-enhanced deep learning.
    Lin P, Yan Y, Huang SY.
    Brief Bioinform; 2023 Jan 19; 24(1):. PubMed ID: 36440949
    [Abstract] [Full Text] [Related]

  • 12. Amalgamation of 3D structure and sequence information for protein-protein interaction prediction.
    Jha K, Saha S.
    Sci Rep; 2020 Nov 05; 10(1):19171. PubMed ID: 33154416
    [Abstract] [Full Text] [Related]

  • 13. Sequence-based prediction of protein protein interaction using a deep-learning algorithm.
    Sun T, Zhou B, Lai L, Pei J.
    BMC Bioinformatics; 2017 May 25; 18(1):277. PubMed ID: 28545462
    [Abstract] [Full Text] [Related]

  • 14. Predicting protein-protein interactions through sequence-based deep learning.
    Hashemifar S, Neyshabur B, Khan AA, Xu J.
    Bioinformatics; 2018 Sep 01; 34(17):i802-i810. PubMed ID: 30423091
    [Abstract] [Full Text] [Related]

  • 15. LSTM-PHV: prediction of human-virus protein-protein interactions by LSTM with word2vec.
    Tsukiyama S, Hasan MM, Fujii S, Kurata H.
    Brief Bioinform; 2021 Nov 05; 22(6):. PubMed ID: 34160596
    [Abstract] [Full Text] [Related]

  • 16. Multimodal deep representation learning for protein interaction identification and protein family classification.
    Zhang D, Kabuka M.
    BMC Bioinformatics; 2019 Dec 02; 20(Suppl 16):531. PubMed ID: 31787089
    [Abstract] [Full Text] [Related]

  • 17. Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.
    Zhou H, Rezaei J, Hugo W, Gao S, Jin J, Fan M, Yong CH, Wozniak M, Wong L.
    BMC Syst Biol; 2013 Dec 02; 7 Suppl 6(Suppl 6):S6. PubMed ID: 24564941
    [Abstract] [Full Text] [Related]

  • 18. MR2CPPIS: Accurate prediction of protein-protein interaction sites based on multi-scale Res2Net with coordinate attention mechanism.
    Gong Y, Li R, Liu Y, Wang J, Cao B, Fu X, Li R, Chen DZ.
    Comput Biol Med; 2024 Jun 02; 176():108543. PubMed ID: 38744015
    [Abstract] [Full Text] [Related]

  • 19. Improving protein-protein interaction prediction using protein language model and protein network features.
    Hu J, Li Z, Rao B, Thafar MA, Arif M.
    Anal Biochem; 2024 Oct 02; 693():115550. PubMed ID: 38679191
    [Abstract] [Full Text] [Related]

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