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Journal Abstract Search

143 related items for PubMed ID: 39082966

  • 1. New GO-based measures in multiple network alignment.
    Yazdani K, Mousapour R, Hayes WB.
    Bioinformatics; 2024 Aug 02; 40(8):. PubMed ID: 39082966
    [Abstract] [Full Text] [Related]

  • 2. SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments.
    Hayes WB, Mamano N.
    Bioinformatics; 2018 Apr 15; 34(8):1345-1352. PubMed ID: 29228175
    [Abstract] [Full Text] [Related]

  • 3. Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization.
    Hashemifar S, Huang Q, Xu J.
    J Comput Biol; 2016 Nov 15; 23(11):903-911. PubMed ID: 27428933
    [Abstract] [Full Text] [Related]

  • 4. SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment.
    Wang S, Atkinson GRS, Hayes WB.
    NPJ Syst Biol Appl; 2022 Jul 20; 8(1):25. PubMed ID: 35859153
    [Abstract] [Full Text] [Related]

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  • 6. DualAligner: a dual alignment-based strategy to align protein interaction networks.
    Seah BS, Bhowmick SS, Dewey CF.
    Bioinformatics; 2014 Sep 15; 30(18):2619-26. PubMed ID: 24872427
    [Abstract] [Full Text] [Related]

  • 7. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 8. Exact p-values for global network alignments via combinatorial analysis of shared GO terms : REFANGO: Rigorous Evaluation of Functional Alignments of Networks using Gene Ontology.
    Hayes WB.
    J Math Biol; 2024 Mar 29; 88(5):50. PubMed ID: 38551701
    [Abstract] [Full Text] [Related]

  • 9. A multiobjective memetic algorithm for PPI network alignment.
    Clark C, Kalita J.
    Bioinformatics; 2015 Jun 15; 31(12):1988-98. PubMed ID: 25667548
    [Abstract] [Full Text] [Related]

  • 10. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 11. Discovering large conserved functional components in global network alignment by graph matching.
    Zhu Y, Li Y, Liu J, Qin L, Yu JX.
    BMC Genomics; 2018 Sep 24; 19(Suppl 7):670. PubMed ID: 30255780
    [Abstract] [Full Text] [Related]

  • 12. PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
    Kalecky K, Cho YR.
    Bioinformatics; 2018 Jul 01; 34(13):i537-i546. PubMed ID: 29949962
    [Abstract] [Full Text] [Related]

  • 13. Global multiple protein-protein interaction network alignment by combining pairwise network alignments.
    Dohrmann J, Puchin J, Singh R.
    BMC Bioinformatics; 2015 Jul 01; 16 Suppl 13(Suppl 13):S11. PubMed ID: 26423128
    [Abstract] [Full Text] [Related]

  • 14. Protein2Vec: Aligning Multiple PPI Networks with Representation Learning.
    Gao J, Tian L, Lv T, Wang J, Song B, Hu X.
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Jul 01; 18(1):240-249. PubMed ID: 31478867
    [Abstract] [Full Text] [Related]

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  • 16. MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.
    Zhang C, Zheng W, Freddolino PL, Zhang Y.
    J Mol Biol; 2018 Jul 20; 430(15):2256-2265. PubMed ID: 29534977
    [Abstract] [Full Text] [Related]

  • 17. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

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  • 19. Unified Alignment of Protein-Protein Interaction Networks.
    Malod-Dognin N, Ban K, Pržulj N.
    Sci Rep; 2017 Apr 19; 7(1):953. PubMed ID: 28424527
    [Abstract] [Full Text] [Related]

  • 20. Joint clustering of protein interaction networks through Markov random walk.
    Wang Y, Qian X.
    BMC Syst Biol; 2014 Apr 19; 8 Suppl 1(Suppl 1):S9. PubMed ID: 24565376
    [Abstract] [Full Text] [Related]

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