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Journal Abstract Search

261 related items for PubMed ID: 7602593

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  • 3. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J, Deremble C, Carbone A.
    Proteins; 2007 May 15; 67(3):695-708. PubMed ID: 17299747
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  • 6. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH, Huang H, Kihara D.
    Proteins; 2006 Aug 15; 64(3):587-600. PubMed ID: 16799934
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  • 9. Use of residue pairs in protein sequence-sequence and sequence-structure alignments.
    Jung J, Lee B.
    Protein Sci; 2000 Aug 15; 9(8):1576-88. PubMed ID: 10975579
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  • 10. Enriching the sequence substitution matrix by structural information.
    Teodorescu O, Galor T, Pillardy J, Elber R.
    Proteins; 2004 Jan 01; 54(1):41-8. PubMed ID: 14705022
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  • 11. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
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  • 12. Alignment and searching for common protein folds using a data bank of structural templates.
    Johnson MS, Overington JP, Blundell TL.
    J Mol Biol; 1993 Jun 05; 231(3):735-52. PubMed ID: 8515448
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  • 13. Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
    Kinjo AR, Nishikawa K.
    Bioinformatics; 2004 Nov 01; 20(16):2504-8. PubMed ID: 15130930
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  • 15. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
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  • 16. Variable gap penalty for protein sequence-structure alignment.
    Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A.
    Protein Eng Des Sel; 2006 Mar 15; 19(3):129-33. PubMed ID: 16423846
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  • 17. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS, Lackner P, Andreeva A, Sippl MJ.
    J Mol Biol; 2000 Apr 07; 297(4):1003-13. PubMed ID: 10736233
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  • 18. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
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  • 19. A structural basis for sequence comparisons. An evaluation of scoring methodologies.
    Johnson MS, Overington JP.
    J Mol Biol; 1993 Oct 20; 233(4):716-38. PubMed ID: 8411177
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  • 20. Analysis and prediction of functional sub-types from protein sequence alignments.
    Hannenhalli SS, Russell RB.
    J Mol Biol; 2000 Oct 13; 303(1):61-76. PubMed ID: 11021970
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