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Journal Abstract Search

261 related items for PubMed ID: 7602593

  • 21. SSALN: an alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs.
    Qiu J, Elber R.
    Proteins; 2006 Mar 01; 62(4):881-91. PubMed ID: 16385554
    [Abstract] [Full Text] [Related]

  • 22. An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):679-89. PubMed ID: 10966777
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  • 23. Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds.
    Overington J, Donnelly D, Johnson MS, Sali A, Blundell TL.
    Protein Sci; 1992 Feb 18; 1(2):216-26. PubMed ID: 1304904
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  • 26. ALIGN_MTX--an optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignment.
    Vishnepolsky B, Pirtskhalava M.
    Comput Biol Chem; 2009 Jun 18; 33(3):235-8. PubMed ID: 19477686
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  • 27. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC, Sjölander K.
    Bioinformatics; 2004 May 22; 20(8):1301-8. PubMed ID: 14962936
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  • 29. Protein structure prediction by threading methods: evaluation of current techniques.
    Lemer CM, Rooman MJ, Wodak SJ.
    Proteins; 1995 Nov 22; 23(3):337-55. PubMed ID: 8710827
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  • 36. PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids.
    Kuznetsov IB, McDuffie M.
    BMC Res Notes; 2015 May 07; 8():187. PubMed ID: 25947299
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  • 37. Using the radial distributions of physical features to compare amino acid environments and align amino acid sequences.
    Wei L, Altman RB, Chang JT.
    Pac Symp Biocomput; 1997 May 07; ():465-76. PubMed ID: 9390315
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  • 38. Sequence alignment with an appropriate substitution matrix.
    Huang X.
    J Comput Biol; 2008 Mar 07; 15(2):129-38. PubMed ID: 18312146
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  • 39. Aligning protein sequence and analysing substitution pattern using a class-specific matrix.
    Xu HS, Ren WK, Liu XH, Li XQ.
    J Biosci; 2010 Jun 07; 35(2):295-314. PubMed ID: 20689185
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  • 40. Assessing the performance of fold recognition methods by means of a comprehensive benchmark.
    Fischer D, Elofsson A, Rice D, Eisenberg D.
    Pac Symp Biocomput; 1996 Jun 07; ():300-18. PubMed ID: 9390240
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