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Journal Abstract Search

1825 related items for PubMed ID: 7630882

  • 1. LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions.
    Wallace AC, Laskowski RA, Thornton JM.
    Protein Eng; 1995 Feb; 8(2):127-34. PubMed ID: 7630882
    [Abstract] [Full Text] [Related]

  • 2. DOMPLOT: a program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts.
    Todd AE, Orengo CA, Thornton JM.
    Protein Eng; 1999 May; 12(5):375-9. PubMed ID: 10360977
    [Abstract] [Full Text] [Related]

  • 3. LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.
    Laskowski RA, Swindells MB.
    J Chem Inf Model; 2011 Oct 24; 51(10):2778-86. PubMed ID: 21919503
    [Abstract] [Full Text] [Related]

  • 4. HERA--a program to draw schematic diagrams of protein secondary structures.
    Hutchinson EG, Thornton JM.
    Proteins; 1990 Oct 24; 8(3):203-12. PubMed ID: 2281084
    [Abstract] [Full Text] [Related]

  • 5. FlexX-Scan: fast, structure-based virtual screening.
    Schellhammer I, Rarey M.
    Proteins; 2004 Nov 15; 57(3):504-17. PubMed ID: 15382244
    [Abstract] [Full Text] [Related]

  • 6. Protein-ligand interfaces are polarized: discovery of a strong trend for intermolecular hydrogen bonds to favor donors on the protein side with implications for predicting and designing ligand complexes.
    Raschka S, Wolf AJ, Bemister-Buffington J, Kuhn LA.
    J Comput Aided Mol Des; 2018 Apr 15; 32(4):511-528. PubMed ID: 29435780
    [Abstract] [Full Text] [Related]

  • 7. 2D depiction of nonbonding interactions for protein complexes.
    Zhou P, Tian F, Shang Z.
    J Comput Chem; 2009 Apr 30; 30(6):940-51. PubMed ID: 18942722
    [Abstract] [Full Text] [Related]

  • 8. NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions.
    Luscombe NM, Laskowski RA, Thornton JM.
    Nucleic Acids Res; 1997 Dec 15; 25(24):4940-5. PubMed ID: 9396800
    [Abstract] [Full Text] [Related]

  • 9. Molecular recognition by proteins: protein-ligand interactions from a structural perspective.
    Wallace AC, Laskowski RA, Singh J, Thornton JM.
    Biochem Soc Trans; 1996 Feb 15; 24(1):280-4. PubMed ID: 8674687
    [No Abstract] [Full Text] [Related]

  • 10. SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions.
    Laskowski RA.
    J Mol Graph; 1995 Oct 15; 13(5):323-30, 307-8. PubMed ID: 8603061
    [Abstract] [Full Text] [Related]

  • 11. Knowledge-based scoring functions in drug design: 3. A two-dimensional knowledge-based hydrogen-bonding potential for the prediction of protein-ligand interactions.
    Zheng M, Xiong B, Luo C, Li S, Liu X, Shen Q, Li J, Zhu W, Luo X, Jiang H.
    J Chem Inf Model; 2011 Nov 28; 51(11):2994-3004. PubMed ID: 21999432
    [Abstract] [Full Text] [Related]

  • 12. PoseEdit: enhanced ligand binding mode communication by interactive 2D diagrams.
    Diedrich K, Krause B, Berg O, Rarey M.
    J Comput Aided Mol Des; 2023 Oct 28; 37(10):491-503. PubMed ID: 37515714
    [Abstract] [Full Text] [Related]

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  • 14. How Significant Are Unusual Protein-Ligand Interactions? Insights from Database Mining.
    Kuhn B, Gilberg E, Taylor R, Cole J, Korb O.
    J Med Chem; 2019 Nov 27; 62(22):10441-10455. PubMed ID: 31730345
    [Abstract] [Full Text] [Related]

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  • 17. From modeling to medicinal chemistry: automatic generation of two-dimensional complex diagrams.
    Stierand K, Rarey M.
    ChemMedChem; 2007 Jun 27; 2(6):853-60. PubMed ID: 17436259
    [Abstract] [Full Text] [Related]

  • 18. Hydrogen bonding interactions of covalently bonded fluorine atoms: from crystallographic data to a new angular function in the GRID force field.
    Carosati E, Sciabola S, Cruciani G.
    J Med Chem; 2004 Oct 07; 47(21):5114-25. PubMed ID: 15456255
    [Abstract] [Full Text] [Related]

  • 19. An electronic environment and contact direction sensitive scoring function for predicting affinities of protein-ligand complexes in Contour(®).
    Lindblom PR, Wu G, Liu Z, Jim KC, Baldwin JJ, Gregg RE, Claremon DA, Singh SB.
    J Mol Graph Model; 2014 Sep 07; 53():118-127. PubMed ID: 25123650
    [Abstract] [Full Text] [Related]

  • 20. Strong and weak hydrogen bonds in the protein-ligand interface.
    Panigrahi SK, Desiraju GR.
    Proteins; 2007 Apr 01; 67(1):128-141. PubMed ID: 17206656
    [Abstract] [Full Text] [Related]

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