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Journal Abstract Search

172 related items for PubMed ID: 7696515

  • 1. Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers.
    Olmsted MC, Bond JP, Anderson CF, Record MT.
    Biophys J; 1995 Feb; 68(2):634-47. PubMed ID: 7696515
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  • 7. Conformational transitions of duplex and triplex nucleic acid helices: thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients.
    Bond JP, Anderson CF, Record MT.
    Biophys J; 1994 Aug; 67(2):825-36. PubMed ID: 7948695
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  • 8. Enhancing sampling of water rehydration upon ligand binding using variants of grand canonical Monte Carlo.
    Ge Y, Melling OJ, Dong W, Essex JW, Mobley DL.
    J Comput Aided Mol Des; 2022 Oct; 36(10):767-779. PubMed ID: 36198874
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  • 9. The effect of nucleic acid geometry on counterion association.
    Olmsted MC.
    J Biomol Struct Dyn; 1996 Apr; 13(5):885-902. PubMed ID: 8723781
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  • 11. Competitive binding of Mg2+, Ca2+, Na+, and K+ ions to DNA in oriented DNA fibers: experimental and Monte Carlo simulation results.
    Korolev N, Lyubartsev AP, Rupprecht A, Nordenskiöld L.
    Biophys J; 1999 Nov; 77(5):2736-49. PubMed ID: 10545373
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  • 12. Monte Carlo calculations of ion distributions surrounding the oligonucleotide d(ATATATATAT)2 in the B, A, and wrinkled D conformations.
    Mills PA, Rashid A, James TL.
    Biopolymers; 1992 Nov; 32(11):1491-501. PubMed ID: 1457729
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  • 13. Salt effects on ligand-DNA binding. Minor groove binding antibiotics.
    Misra VK, Sharp KA, Friedman RA, Honig B.
    J Mol Biol; 1994 Apr 29; 238(2):245-63. PubMed ID: 7512653
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  • 15. Computation of binding free energy with molecular dynamics and grand canonical Monte Carlo simulations.
    Deng Y, Roux B.
    J Chem Phys; 2008 Mar 21; 128(11):115103. PubMed ID: 18361618
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  • 16. Spermine: an "invisible" component in the crystals of B-DNA. A grand canonical Monte Carlo and molecular dynamics simulation study.
    Korolev N, Lyubartsev AP, Nordenskiöld L, Laaksonen A.
    J Mol Biol; 2001 May 18; 308(5):907-17. PubMed ID: 11352581
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  • 19. Competitive substitution of hexammine cobalt(III) for Na+ and K+ ions in oriented DNA fibers.
    Korolev N, Lyubartsev AP, Rupprecht A, Nordenskiöld L.
    Biopolymers; 2001 Mar 18; 58(3):268-78. PubMed ID: 11169387
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