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Journal Abstract Search

333 related items for PubMed ID: 7824524

  • 1. Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.
    Lee KH, Xie D, Freire E, Amzel LM.
    Proteins; 1994 Sep; 20(1):68-84. PubMed ID: 7824524
    [Abstract] [Full Text] [Related]

  • 2. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps.
    Stapley BJ, Doig AJ.
    J Mol Biol; 1997 Sep 26; 272(3):456-64. PubMed ID: 9325103
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  • 4. The nature of the free energy barriers to two-state folding.
    Akmal A, Muñoz V.
    Proteins; 2004 Oct 01; 57(1):142-52. PubMed ID: 15326600
    [Abstract] [Full Text] [Related]

  • 5. Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
    Penel S, Doig AJ.
    J Mol Biol; 2001 Jan 26; 305(4):961-8. PubMed ID: 11162106
    [Abstract] [Full Text] [Related]

  • 6. Side-chain conformational entropy in protein folding.
    Doig AJ, Sternberg MJ.
    Protein Sci; 1995 Nov 26; 4(11):2247-51. PubMed ID: 8563620
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  • 8. Entropy capacity determines protein folding.
    Galzitskaya OV, Garbuzynskiy SO.
    Proteins; 2006 Apr 01; 63(1):144-54. PubMed ID: 16400647
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  • 11. Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
    Blaber M, Zhang XJ, Lindstrom JD, Pepiot SD, Baase WA, Matthews BW.
    J Mol Biol; 1994 Jan 14; 235(2):600-24. PubMed ID: 8289284
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  • 12. Empirical scale of side-chain conformational entropy in protein folding.
    Pickett SD, Sternberg MJ.
    J Mol Biol; 1993 Jun 05; 231(3):825-39. PubMed ID: 8515453
    [Abstract] [Full Text] [Related]

  • 13. Thermodynamics of a reverse turn motif. Solvent effects and side-chain packing.
    Demchuk E, Bashford D, Gippert GP, Case DA.
    J Mol Biol; 1997 Jul 11; 270(2):305-17. PubMed ID: 9236131
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  • 14. Maximum entropy, analysis of kinetic processes involving chemical and folding-unfolding changes in proteins.
    Plaza del Pino IM, Parody-Morreale A, Sanchez-Ruiz JM.
    Anal Biochem; 1997 Jan 15; 244(2):239-55. PubMed ID: 9025940
    [Abstract] [Full Text] [Related]

  • 15. Calculations of solute and solvent entropies from molecular dynamics simulations.
    Carlsson J, Aqvist J.
    Phys Chem Chem Phys; 2006 Dec 14; 8(46):5385-95. PubMed ID: 17119645
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  • 16. Importance of chirality and reduced flexibility of protein side chains: a study with square and tetrahedral lattice models.
    Zhang J, Chen Y, Chen R, Liang J.
    J Chem Phys; 2004 Jul 01; 121(1):592-603. PubMed ID: 15260581
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  • 17. Optimal region of average side-chain entropy for fast protein folding.
    Galzitskaya OV, Surin AK, Nakamura H.
    Protein Sci; 2000 Mar 01; 9(3):580-6. PubMed ID: 10752620
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  • 18. How the stabilization of INK4 tumor suppressor 3D structure evaluated by quantum chemical and molecular mechanics calculations corresponds well with experimental results: interplay of association enthalpy, entropy, and solvation effects.
    Otyepka M, Sklenovský P, Horinek D, Kubar T, Hobza P.
    J Phys Chem B; 2006 Mar 09; 110(9):4423-9. PubMed ID: 16509744
    [Abstract] [Full Text] [Related]

  • 19. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM, Gabb HA, Sternberg MJ.
    J Mol Biol; 1998 Feb 13; 276(1):265-85. PubMed ID: 9514726
    [Abstract] [Full Text] [Related]

  • 20. Computational protein design with side-chain conformational entropy.
    Sciretti D, Bruscolini P, Pelizzola A, Pretti M, Jaramillo A.
    Proteins; 2009 Jan 13; 74(1):176-91. PubMed ID: 18618711
    [Abstract] [Full Text] [Related]

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