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Journal Abstract Search

188 related items for PubMed ID: 8159662

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  • 2. Conformational analysis of endothelin-1: effects of solvation free energy.
    Hempel JC, Fine RM, Hassan M, Ghoul W, Guaragna A, Koerber SC, Li Z, Hagler AT.
    Biopolymers; 1995 Sep; 36(3):283-301. PubMed ID: 7669916
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  • 5. Solvation parameters for predicting the structure of surface loops in proteins: transferability and entropic effects.
    Das B, Meirovitch H.
    Proteins; 2003 May 15; 51(3):470-83. PubMed ID: 12696057
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  • 6. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN, Almagro JC, Hermans J.
    Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412
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  • 7. Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor.
    Williams RL, Vila J, Perrot G, Scheraga HA.
    Proteins; 1992 Sep 01; 14(1):110-9. PubMed ID: 1384032
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  • 8. Necessary conditions for avoiding incorrect polypeptide folds in conformational search by energy minimization.
    Vajda S, Jafri MS, Sezerman OU, DeLisi C.
    Biopolymers; 1993 Jan 01; 33(1):173-92. PubMed ID: 8427934
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  • 9. Does conformational free energy distinguish loop conformations in proteins?
    Pellequer JL, Chen SW.
    Biophys J; 1997 Nov 01; 73(5):2359-75. PubMed ID: 9370431
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  • 11. Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions.
    Forrest LR, Woolf TB.
    Proteins; 2003 Sep 01; 52(4):492-509. PubMed ID: 12910450
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  • 12. Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets.
    Yang AS, Honig B.
    J Mol Biol; 1995 Sep 22; 252(3):366-76. PubMed ID: 7563057
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  • 13. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM, Gabb HA, Sternberg MJ.
    J Mol Biol; 1998 Feb 13; 276(1):265-85. PubMed ID: 9514726
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  • 16. Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI.
    Tadokoro T, You DJ, Abe Y, Chon H, Matsumura H, Koga Y, Takano K, Kanaya S.
    Biochemistry; 2007 Jun 26; 46(25):7460-8. PubMed ID: 17536836
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  • 17. Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation terms.
    Janardhan A, Vajda S.
    Protein Sci; 1998 Aug 26; 7(8):1772-80. PubMed ID: 10082374
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  • 20. Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides.
    Pitera JW, Kollman PA.
    Proteins; 2000 Nov 15; 41(3):385-97. PubMed ID: 11025549
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