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Journal Abstract Search

143 related items for PubMed ID: 8346192

  • 1. A molecular dynamics study of solvent behavior around a protein.
    Komeiji Y, Uebayasi M, Someya J, Yamato I.
    Proteins; 1993 Jul; 16(3):268-77. PubMed ID: 8346192
    [Abstract] [Full Text] [Related]

  • 2. Distribution of solvent molecules around apolar side-chains in protein crystals.
    Walshaw J, Goodfellow JM.
    J Mol Biol; 1993 May 20; 231(2):392-414. PubMed ID: 8510154
    [Abstract] [Full Text] [Related]

  • 3. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S, Saven JG.
    Proteins; 2005 Aug 15; 60(3):450-63. PubMed ID: 15937899
    [Abstract] [Full Text] [Related]

  • 4. A new angle on heat capacity changes in hydrophobic solvation.
    Gallagher KR, Sharp KA.
    J Am Chem Soc; 2003 Aug 13; 125(32):9853-60. PubMed ID: 12904053
    [Abstract] [Full Text] [Related]

  • 5. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
    Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF.
    J Mol Biol; 1998 Oct 02; 282(4):859-73. PubMed ID: 9743632
    [Abstract] [Full Text] [Related]

  • 6. Molecular dynamics study of the solvation of an alpha-helical transmembrane peptide by DMSO.
    Duarte AM, van Mierlo CP, Hemminga MA.
    J Phys Chem B; 2008 Jul 24; 112(29):8664-71. PubMed ID: 18582096
    [Abstract] [Full Text] [Related]

  • 7. A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking.
    Li AJ, Nussinov R.
    Proteins; 1998 Jul 01; 32(1):111-27. PubMed ID: 9672047
    [Abstract] [Full Text] [Related]

  • 8. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA, Mehler EL, Zhang D, Weinstein H.
    Proteins; 2003 Apr 01; 51(1):109-25. PubMed ID: 12596268
    [Abstract] [Full Text] [Related]

  • 9. Classical molecular-dynamics simulation of the hydroxyl radical in water.
    Campo MG, Grigera JR.
    J Chem Phys; 2005 Aug 22; 123(8):084507. PubMed ID: 16164312
    [Abstract] [Full Text] [Related]

  • 10. A first principles molecular dynamics study of lithium atom solvation in binary liquid mixture of water and ammonia: structural, electronic, and dynamical properties.
    Pratihar S, Chandra A.
    J Chem Phys; 2011 Jan 14; 134(2):024519. PubMed ID: 21241132
    [Abstract] [Full Text] [Related]

  • 11. Simulations of macromolecules in protective and denaturing osmolytes: properties of mixed solvent systems and their effects on water and protein structure and dynamics.
    Beck DA, Bennion BJ, Alonso DO, Daggett V.
    Methods Enzymol; 2007 Jan 14; 428():373-96. PubMed ID: 17875430
    [Abstract] [Full Text] [Related]

  • 12. Structure and dynamics of water surrounding the poly(methacrylic acid): a molecular dynamics study.
    Ju SP, Lee WJ, Huang CI, Cheng WZ, Chung YT.
    J Chem Phys; 2007 Jun 14; 126(22):224901. PubMed ID: 17581077
    [Abstract] [Full Text] [Related]

  • 13. Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.
    Olivella M, Deupi X, Govaerts C, Pardo L.
    Biophys J; 2002 Jun 14; 82(6):3207-13. PubMed ID: 12023245
    [Abstract] [Full Text] [Related]

  • 14. Molecular dynamics study of onset of water gelation around the collagen triple helix.
    Handgraaf JW, Zerbetto F.
    Proteins; 2006 Aug 15; 64(3):711-8. PubMed ID: 16741960
    [Abstract] [Full Text] [Related]

  • 15. Atomic resolution (0.83 A) crystal structure of the hydrophobic protein crambin at 130 K.
    Teeter MM, Roe SM, Heo NH.
    J Mol Biol; 1993 Mar 05; 230(1):292-311. PubMed ID: 8450543
    [Abstract] [Full Text] [Related]

  • 16. Characterization of the denaturation of human alpha-lactalbumin in urea by molecular dynamics simulations.
    Smith LJ, Jones RM, van Gunsteren WF.
    Proteins; 2005 Feb 01; 58(2):439-49. PubMed ID: 15558602
    [Abstract] [Full Text] [Related]

  • 17. Simulation studies of the protein-water interface. I. Properties at the molecular resolution.
    Schröder C, Rudas T, Boresch S, Steinhauser O.
    J Chem Phys; 2006 Jun 21; 124(23):234907. PubMed ID: 16821953
    [Abstract] [Full Text] [Related]

  • 18. Molecular dynamics simulations for water and ions in protein crystals.
    Hu Z, Jiang J.
    Langmuir; 2008 Apr 15; 24(8):4215-23. PubMed ID: 18318554
    [Abstract] [Full Text] [Related]

  • 19. Monte Carlo simulations of the solution structure of simple alcohols in water-acetonitrile mixtures.
    Nagy PI, Erhardt PW.
    J Phys Chem B; 2005 Mar 31; 109(12):5855-72. PubMed ID: 16851638
    [Abstract] [Full Text] [Related]

  • 20. Molecular dynamics simulations of trehalose as a 'dynamic reducer' for solvent water molecules in the hydration shell.
    Choi Y, Cho KW, Jeong K, Jung S.
    Carbohydr Res; 2006 Jun 12; 341(8):1020-8. PubMed ID: 16546147
    [Abstract] [Full Text] [Related]

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