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Journal Abstract Search

293 related items for PubMed ID: 8445659

  • 1. Modeling side-chain conformation for homologous proteins using an energy-based rotamer search.
    Wilson C, Gregoret LM, Agard DA.
    J Mol Biol; 1993 Feb 20; 229(4):996-1006. PubMed ID: 8445659
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  • 2. Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool.
    Bower MJ, Cohen FE, Dunbrack RL.
    J Mol Biol; 1997 Apr 18; 267(5):1268-82. PubMed ID: 9150411
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  • 3. Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure.
    Mendes J, Nagarajaram HA, Soares CM, Blundell TL, Carrondo MA.
    Biopolymers; 2001 Aug 18; 59(2):72-86. PubMed ID: 11373721
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  • 6. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM, Gabb HA, Sternberg MJ.
    J Mol Biol; 1998 Feb 13; 276(1):265-85. PubMed ID: 9514726
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  • 7. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O, Wang C, Baker D.
    Proteins; 2005 Aug 01; 60(2):187-94. PubMed ID: 15981249
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  • 8. Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology.
    Holm L, Sander C.
    Proteins; 1992 Oct 01; 14(2):213-23. PubMed ID: 1409569
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  • 10. SPINFAST: using structure alignment profiles to enhance the accuracy and assess the reliability of protein side-chain modeling.
    Poleksic A, Danzer JF, Palmer BA, Olafson BD, Debe DA.
    Proteins; 2006 Dec 01; 65(4):953-8. PubMed ID: 17006949
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  • 11. Statistically based reduced representation of amino acid side chains.
    Rainey JK, Goh MC.
    J Chem Inf Comput Sci; 2004 Dec 01; 44(3):817-30. PubMed ID: 15154746
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  • 12. Bayesian statistical analysis of protein side-chain rotamer preferences.
    Dunbrack RL, Cohen FE.
    Protein Sci; 1997 Aug 01; 6(8):1661-81. PubMed ID: 9260279
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  • 18. Prediction and evaluation of side-chain conformations for protein backbone structures.
    Shenkin PS, Farid H, Fetrow JS.
    Proteins; 1996 Nov 01; 26(3):323-52. PubMed ID: 8953653
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  • 20. Modeling of globular proteins. A distance-based data search procedure for the construction of insertion/deletion regions and Pro----non-Pro mutations.
    Summers NL, Karplus M.
    J Mol Biol; 1990 Dec 20; 216(4):991-1016. PubMed ID: 2266566
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