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Journal Abstract Search

230 related items for PubMed ID: 8603060

  • 1. Simulating the folding of small proteins by use of the local minimum energy and the free solvation energy yields native-like structures.
    Brasseur R.
    J Mol Graph; 1995 Oct; 13(5):312-22. PubMed ID: 8603060
    [Abstract] [Full Text] [Related]

  • 2. Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.
    Liu Y, Beveridge DL.
    Proteins; 2002 Jan 01; 46(1):128-46. PubMed ID: 11746709
    [Abstract] [Full Text] [Related]

  • 3. Interactions that favor the native over the non-native disulfide bond among residues 58-72 in the oxidative folding of bovine pancreatic ribonuclease A.
    Carty RP, Pincus MR, Scheraga HA.
    Biochemistry; 2002 Dec 17; 41(50):14815-9. PubMed ID: 12475229
    [Abstract] [Full Text] [Related]

  • 4. Free energy determinants of secondary structure formation: I. alpha-Helices.
    Yang AS, Honig B.
    J Mol Biol; 1995 Sep 22; 252(3):351-65. PubMed ID: 7563056
    [Abstract] [Full Text] [Related]

  • 5. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN, Almagro JC, Hermans J.
    Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412
    [Abstract] [Full Text] [Related]

  • 6. Solvent accessibility, protein surfaces, and protein folding.
    Lesk AM, Chothia C.
    Biophys J; 1980 Oct 01; 32(1):35-47. PubMed ID: 7248454
    [Abstract] [Full Text] [Related]

  • 7. First-principles calculation of the folding free energy of a three-helix bundle protein.
    Boczko EM, Brooks CL.
    Science; 1995 Jul 21; 269(5222):393-6. PubMed ID: 7618103
    [Abstract] [Full Text] [Related]

  • 8. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R.
    Proteins; 2003 Nov 01; 53(2):148-61. PubMed ID: 14517967
    [Abstract] [Full Text] [Related]

  • 9. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F.
    J Mol Biol; 2000 Jul 28; 300(5):1335-59. PubMed ID: 10903873
    [Abstract] [Full Text] [Related]

  • 10. Alpha-helix and beta-hairpin Folding from experiment, analytical theory and molecular dynamics simulations.
    Galzitskaya OV, Higo J, Finkelstein AV.
    Curr Protein Pept Sci; 2002 Apr 28; 3(2):191-200. PubMed ID: 12188903
    [Abstract] [Full Text] [Related]

  • 11. Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.
    Bordner AJ, Zorman B, Abagyan R.
    J Comput Aided Mol Des; 2011 Oct 28; 25(10):895-911. PubMed ID: 21904908
    [Abstract] [Full Text] [Related]

  • 12. Determination of the conformation of folding initiation sites in proteins by computer simulation.
    Avbelj F, Moult J.
    Proteins; 1995 Oct 28; 23(2):129-41. PubMed ID: 8592695
    [Abstract] [Full Text] [Related]

  • 13. A tale of two secondary structure elements: when a beta-hairpin becomes an alpha-helix.
    Cregut D, Civera C, Macias MJ, Wallon G, Serrano L.
    J Mol Biol; 1999 Sep 17; 292(2):389-401. PubMed ID: 10493883
    [Abstract] [Full Text] [Related]

  • 14. Conformational analysis of endothelin-1: effects of solvation free energy.
    Hempel JC, Fine RM, Hassan M, Ghoul W, Guaragna A, Koerber SC, Li Z, Hagler AT.
    Biopolymers; 1995 Sep 17; 36(3):283-301. PubMed ID: 7669916
    [Abstract] [Full Text] [Related]

  • 15. Thermodynamics of protein folding: effects of hydration and electrostatic interactions.
    Ooi T.
    Adv Biophys; 1994 Sep 17; 30():105-54. PubMed ID: 7709803
    [Abstract] [Full Text] [Related]

  • 16. Universal effects of solvent species on the stabilized structure of a protein.
    Hayashi T, Inoue M, Yasuda S, Petretto E, Škrbić T, Giacometti A, Kinoshita M.
    J Chem Phys; 2018 Jul 28; 149(4):045105. PubMed ID: 30068177
    [Abstract] [Full Text] [Related]

  • 17. Acid and thermal denaturation of barnase investigated by molecular dynamics simulations.
    Caflisch A, Karplus M.
    J Mol Biol; 1995 Oct 06; 252(5):672-708. PubMed ID: 7563082
    [Abstract] [Full Text] [Related]

  • 18. [A turning point in the knowledge of the structure-function-activity relations of elastin].
    Alix AJ.
    J Soc Biol; 2001 Oct 06; 195(2):181-93. PubMed ID: 11727705
    [Abstract] [Full Text] [Related]

  • 19. Prediction of the three-dimensional structure of proteins using the electrostatic screening model and hierarchic condensation.
    Avbelj F, Fele L.
    Proteins; 1998 Apr 01; 31(1):74-96. PubMed ID: 9552160
    [Abstract] [Full Text] [Related]

  • 20. Beta-sheet folding of fragment (16-36) of bovine pancreatic trypsin inhibitor as predicted by Monte Carlo simulated annealing.
    Nakazawa T, Kawai H, Okamoto Y, Fukugita M.
    Protein Eng; 1992 Sep 01; 5(6):495-503. PubMed ID: 1279665
    [Abstract] [Full Text] [Related]

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