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Journal Abstract Search

201 related items for PubMed ID: 8604145

  • 1. Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria specific for strand regions.
    Dandekar T, Argos P.
    J Mol Biol; 1996 Mar 01; 256(3):645-60. PubMed ID: 8604145
    [Abstract] [Full Text] [Related]

  • 2. Folding the main chain of small proteins with the genetic algorithm.
    Dandekar T, Argos P.
    J Mol Biol; 1994 Feb 25; 236(3):844-61. PubMed ID: 8114098
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  • 4. Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.
    Ortiz AR, Kolinski A, Skolnick J.
    J Mol Biol; 1998 Mar 27; 277(2):419-48. PubMed ID: 9514747
    [Abstract] [Full Text] [Related]

  • 5. New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.
    Wojcik J, Mornon JP, Chomilier J.
    J Mol Biol; 1999 Jun 25; 289(5):1469-90. PubMed ID: 10373380
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  • 6. Protein fold recognition by mapping predicted secondary structures.
    Russell RB, Copley RR, Barton GJ.
    J Mol Biol; 1996 Jun 14; 259(3):349-65. PubMed ID: 8676374
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  • 7. Combined multiple sequence reduced protein model approach to predict the tertiary structure of small proteins.
    Ortiz AR, Kolinski A, Skolnick J.
    Pac Symp Biocomput; 1998 Jun 14; ():377-88. PubMed ID: 9697197
    [Abstract] [Full Text] [Related]

  • 8. Protein tertiary structure prediction using a branch and bound algorithm.
    Eyrich VA, Standley DM, Felts AK, Friesner RA.
    Proteins; 1999 Apr 01; 35(1):41-57. PubMed ID: 10090285
    [Abstract] [Full Text] [Related]

  • 9. MONSSTER: a method for folding globular proteins with a small number of distance restraints.
    Skolnick J, Kolinski A, Ortiz AR.
    J Mol Biol; 1997 Jan 17; 265(2):217-41. PubMed ID: 9020984
    [Abstract] [Full Text] [Related]

  • 10. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A, Bagchi B.
    J Chem Phys; 2004 Jan 15; 120(3):1602-12. PubMed ID: 15268287
    [Abstract] [Full Text] [Related]

  • 11. Protein topology recognition from secondary structure sequences: application of the hidden Markov models to the alpha class proteins.
    Di Francesco V, Garnier J, Munson PJ.
    J Mol Biol; 1997 Mar 28; 267(2):446-63. PubMed ID: 9096237
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  • 12. Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials.
    Hubbard TJ, Park J.
    Proteins; 1995 Nov 28; 23(3):398-402. PubMed ID: 8710832
    [Abstract] [Full Text] [Related]

  • 13. A fast method to sample real protein conformational space.
    Feldman HJ, Hogue CW.
    Proteins; 2000 May 01; 39(2):112-31. PubMed ID: 10737933
    [Abstract] [Full Text] [Related]

  • 14. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K, Kurgan L.
    Bioinformatics; 2007 Nov 01; 23(21):2843-50. PubMed ID: 17942446
    [Abstract] [Full Text] [Related]

  • 15. Understanding the role of the topology in protein folding by computational inverse folding experiments.
    Mucherino A, Costantini S, di Serafino D, D'Apuzzo M, Facchiano A, Colonna G.
    Comput Biol Chem; 2008 Aug 01; 32(4):233-9. PubMed ID: 18479970
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  • 16. Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model.
    Kolinski A, Skolnick J.
    Proteins; 1998 Sep 01; 32(4):475-94. PubMed ID: 9726417
    [Abstract] [Full Text] [Related]

  • 17. A novel fold recognition method using composite predicted secondary structures.
    An Y, Friesner RA.
    Proteins; 2002 Aug 01; 48(2):352-66. PubMed ID: 12112702
    [Abstract] [Full Text] [Related]

  • 18. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
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