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Journal Abstract Search

106 related items for PubMed ID: 8613988

  • 1. From structure to sequence and back again.
    Hinds DA, Levitt M.
    J Mol Biol; 1996 Apr 26; 258(1):201-9. PubMed ID: 8613988
    [Abstract] [Full Text] [Related]

  • 2. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M, Yanover C.
    Proteins; 2009 May 15; 75(3):682-705. PubMed ID: 19003998
    [Abstract] [Full Text] [Related]

  • 3. High coordination lattice models of protein structure, dynamics and thermodynamics.
    Koliński A, Skolnick J.
    Acta Biochim Pol; 1997 May 15; 44(3):389-422. PubMed ID: 9511954
    [Abstract] [Full Text] [Related]

  • 4. Computational design of a single amino acid sequence that can switch between two distinct protein folds.
    Ambroggio XI, Kuhlman B.
    J Am Chem Soc; 2006 Feb 01; 128(4):1154-61. PubMed ID: 16433531
    [Abstract] [Full Text] [Related]

  • 5. Protein folding: optimized sequences obtained by simulated breeding in a minimalist model.
    Ebeling M, Nadler W.
    Biopolymers; 1997 Feb 01; 41(2):165-80. PubMed ID: 9004551
    [Abstract] [Full Text] [Related]

  • 6. Prediction of amino acid sequence from structure.
    Raha K, Wollacott AM, Italia MJ, Desjarlais JR.
    Protein Sci; 2000 Jun 01; 9(6):1106-19. PubMed ID: 10892804
    [Abstract] [Full Text] [Related]

  • 7. Computational design of proteins stereochemically optimized in size, stability, and folding speed.
    Joshi S, Rana S, Wangikar P, Durani S.
    Biopolymers; 2006 Oct 05; 83(2):122-34. PubMed ID: 16683262
    [Abstract] [Full Text] [Related]

  • 8. Design and synthesis of a globin fold.
    Isogai Y, Ota M, Fujisawa T, Izuno H, Mukai M, Nakamura H, Iizuka T, Nishikawa K.
    Biochemistry; 1999 Jun 08; 38(23):7431-43. PubMed ID: 10360940
    [Abstract] [Full Text] [Related]

  • 9. Heuristic energy landscape paving for protein folding problem in the three-dimensional HP lattice model.
    Liu J, Li G, Yu J, Yao Y.
    Comput Biol Chem; 2012 Jun 08; 38():17-26. PubMed ID: 22551826
    [Abstract] [Full Text] [Related]

  • 10. Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism.
    Klimov DK, Thirumalai D.
    J Mol Biol; 1998 Sep 18; 282(2):471-92. PubMed ID: 9735420
    [Abstract] [Full Text] [Related]

  • 11. Comparing folding codes for proteins and polymers.
    Chan HS, Dill KA.
    Proteins; 1996 Mar 18; 24(3):335-44. PubMed ID: 8778780
    [Abstract] [Full Text] [Related]

  • 12. Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure.
    Zou J, Saven JG.
    J Mol Biol; 2000 Feb 11; 296(1):281-94. PubMed ID: 10656832
    [Abstract] [Full Text] [Related]

  • 13. Denatured state is critical in determining the properties of model proteins designed on different folds.
    Amatori A, Tiana G, Ferkinghoff-Borg J, Broglia RA.
    Proteins; 2008 Feb 15; 70(3):1047-55. PubMed ID: 17847099
    [Abstract] [Full Text] [Related]

  • 14. A simple physical model for the prediction and design of protein-DNA interactions.
    Havranek JJ, Duarte CM, Baker D.
    J Mol Biol; 2004 Nov 12; 344(1):59-70. PubMed ID: 15504402
    [Abstract] [Full Text] [Related]

  • 15. Design of amino acid sequences to fold into C(alpha)-model proteins.
    Amatori A, Tiana G, Sutto L, Ferkinghoff-Borg J, Trovato A, Broglia RA.
    J Chem Phys; 2005 Aug 01; 123(5):054904. PubMed ID: 16108690
    [Abstract] [Full Text] [Related]

  • 16. Automated design of specificity in molecular recognition.
    Havranek JJ, Harbury PB.
    Nat Struct Biol; 2003 Jan 01; 10(1):45-52. PubMed ID: 12459719
    [Abstract] [Full Text] [Related]

  • 17. Conformational analysis of the 20-residue membrane-bound portion of melittin by conformational space annealing.
    Lee J, Scheraga HA, Rackovsky S.
    Biopolymers; 1998 Aug 01; 46(2):103-16. PubMed ID: 9664844
    [Abstract] [Full Text] [Related]

  • 18. Automatic protein design with all atom force-fields by exact and heuristic optimization.
    Wernisch L, Hery S, Wodak SJ.
    J Mol Biol; 2000 Aug 18; 301(3):713-36. PubMed ID: 10966779
    [Abstract] [Full Text] [Related]

  • 19. Exploration of two-dimensional hydrophobic-polar lattice model by combining local search with elastic net algorithm.
    Guo YZ, Feng EM, Wang Y.
    J Chem Phys; 2006 Oct 21; 125(15):154102. PubMed ID: 17059234
    [Abstract] [Full Text] [Related]

  • 20. The simulation of the three-dimensional lattice hydrophobic-polar protein folding.
    Guo YZ, Feng EM.
    J Chem Phys; 2006 Dec 21; 125(23):234703. PubMed ID: 17190566
    [Abstract] [Full Text] [Related]

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