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Journal Abstract Search

274 related items for PubMed ID: 8759004

  • 1. PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames.
    Birney E, Thompson JD, Gibson TJ.
    Nucleic Acids Res; 1996 Jul 15; 24(14):2730-9. PubMed ID: 8759004
    [Abstract] [Full Text] [Related]

  • 2. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

  • 3. Alignments of DNA and protein sequences containing frameshift errors.
    Guan X, Uberbacher EC.
    Comput Appl Biosci; 1996 Feb 22; 12(1):31-40. PubMed ID: 8670617
    [Abstract] [Full Text] [Related]

  • 4. Comparison of DNA sequences with protein sequences.
    Pearson WR, Wood T, Zhang Z, Miller W.
    Genomics; 1997 Nov 15; 46(1):24-36. PubMed ID: 9403055
    [Abstract] [Full Text] [Related]

  • 5. Using CLUSTAL for multiple sequence alignments.
    Higgins DG, Thompson JD, Gibson TJ.
    Methods Enzymol; 1996 Nov 15; 266():383-402. PubMed ID: 8743695
    [Abstract] [Full Text] [Related]

  • 6. Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
    Morgenstern B, Dress A, Werner T.
    Proc Natl Acad Sci U S A; 1996 Oct 29; 93(22):12098-103. PubMed ID: 8901539
    [Abstract] [Full Text] [Related]

  • 7. Finding homologs to nucleic acid or protein sequences using the framesearch program.
    Healy M.
    Curr Protoc Bioinformatics; 2002 Aug 29; Chapter 3():Unit 3.2. PubMed ID: 18792937
    [Abstract] [Full Text] [Related]

  • 8. Finding errors in DNA sequences.
    Posfai J, Roberts RJ.
    Proc Natl Acad Sci U S A; 1992 May 15; 89(10):4698-702. PubMed ID: 1316617
    [Abstract] [Full Text] [Related]

  • 9. SeqHelp: a program to analyze molecular sequences utilizing common computational resources.
    Lee MK, Lynch ED, King MC.
    Genome Res; 1998 Mar 15; 8(3):306-12. PubMed ID: 9521933
    [Abstract] [Full Text] [Related]

  • 10. A tool for analyzing and annotating genomic sequences.
    Huang X, Adams MD, Zhou H, Kerlavage AR.
    Genomics; 1997 Nov 15; 46(1):37-45. PubMed ID: 9403056
    [Abstract] [Full Text] [Related]

  • 11. GATA: a graphic alignment tool for comparative sequence analysis.
    Nix DA, Eisen MB.
    BMC Bioinformatics; 2005 Jan 17; 6():9. PubMed ID: 15655071
    [Abstract] [Full Text] [Related]

  • 12. MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons.
    Ranwez V, Harispe S, Delsuc F, Douzery EJ.
    PLoS One; 2011 Jan 17; 6(9):e22594. PubMed ID: 21949676
    [Abstract] [Full Text] [Related]

  • 13. Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison.
    Birney E, Durbin R.
    Proc Int Conf Intell Syst Mol Biol; 1997 Jan 17; 5():56-64. PubMed ID: 9322016
    [Abstract] [Full Text] [Related]

  • 14. Filtering redundancies for sequence similarity search programs.
    Cantalloube H, Chomilier J, Chiusa S, Lonquety M, Spadoni JL, Zagury JF.
    J Biomol Struct Dyn; 2005 Feb 17; 22(4):487-92. PubMed ID: 15588112
    [Abstract] [Full Text] [Related]

  • 15. SeqTools: visual tools for manual analysis of sequence alignments.
    Barson G, Griffiths E.
    BMC Res Notes; 2016 Jan 22; 9():39. PubMed ID: 26801397
    [Abstract] [Full Text] [Related]

  • 16. Alignment of protein sequences by their profiles.
    Marti-Renom MA, Madhusudhan MS, Sali A.
    Protein Sci; 2004 Apr 22; 13(4):1071-87. PubMed ID: 15044736
    [Abstract] [Full Text] [Related]

  • 17. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A, Hazelhurst S, Durand PM.
    BMC Bioinformatics; 2015 Aug 14; 16():255. PubMed ID: 26269100
    [Abstract] [Full Text] [Related]

  • 18. Improved sensitivity of profile searches through the use of sequence weights and gap excision.
    Thompson JD, Higgins DG, Gibson TJ.
    Comput Appl Biosci; 1994 Feb 14; 10(1):19-29. PubMed ID: 8193951
    [Abstract] [Full Text] [Related]

  • 19. Pareto optimal pairwise sequence alignment.
    DeRonne KW, Karypis G.
    IEEE/ACM Trans Comput Biol Bioinform; 2013 Feb 14; 10(2):481-93. PubMed ID: 23929871
    [Abstract] [Full Text] [Related]

  • 20. Database searching with DNA and protein sequences: an introduction.
    Sansom C.
    Brief Bioinform; 2000 Feb 14; 1(1):22-32. PubMed ID: 11466971
    [Abstract] [Full Text] [Related]

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