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Journal Abstract Search

492 related items for PubMed ID: 8980688

  • 1. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O.
    J Mol Biol; 1996 Dec 13; 264(4):823-38. PubMed ID: 8980688
    [Abstract] [Full Text] [Related]

  • 2. Ancestral sequence alignment under optimal conditions.
    Hudek AK, Brown DG.
    BMC Bioinformatics; 2005 Nov 17; 6():273. PubMed ID: 16293191
    [Abstract] [Full Text] [Related]

  • 3. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC, Sjölander K.
    Bioinformatics; 2004 May 22; 20(8):1301-8. PubMed ID: 14962936
    [Abstract] [Full Text] [Related]

  • 4. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited.
    Vogt G, Etzold T, Argos P.
    J Mol Biol; 1995 Jun 16; 249(4):816-31. PubMed ID: 7602593
    [Abstract] [Full Text] [Related]

  • 5. MUSTANG: a multiple structural alignment algorithm.
    Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.
    Proteins; 2006 Aug 15; 64(3):559-74. PubMed ID: 16736488
    [Abstract] [Full Text] [Related]

  • 6. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 7. Improvement in the accuracy of multiple sequence alignment program MAFFT.
    Katoh K, Kuma K, Miyata T, Toh H.
    Genome Inform; 2005 Apr 01; 16(1):22-33. PubMed ID: 16362903
    [Abstract] [Full Text] [Related]

  • 8. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

  • 9. An iterative refinement algorithm for consistency based multiple structural alignment methods.
    Chen Y, Crippen GM.
    Bioinformatics; 2006 Sep 01; 22(17):2087-93. PubMed ID: 16809393
    [Abstract] [Full Text] [Related]

  • 10. Pairwise sequence alignment below the twilight zone.
    Blake JD, Cohen FE.
    J Mol Biol; 2001 Mar 23; 307(2):721-35. PubMed ID: 11254392
    [Abstract] [Full Text] [Related]

  • 11. 3DCoffee: combining protein sequences and structures within multiple sequence alignments.
    O'Sullivan O, Suhre K, Abergel C, Higgins DG, Notredame C.
    J Mol Biol; 2004 Jul 02; 340(2):385-95. PubMed ID: 15201059
    [Abstract] [Full Text] [Related]

  • 12. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS, Lackner P, Andreeva A, Sippl MJ.
    J Mol Biol; 2000 Apr 07; 297(4):1003-13. PubMed ID: 10736233
    [Abstract] [Full Text] [Related]

  • 13. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    Notredame C, Higgins DG, Heringa J.
    J Mol Biol; 2000 Sep 08; 302(1):205-17. PubMed ID: 10964570
    [Abstract] [Full Text] [Related]

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  • 17. Analysis and prediction of functional sub-types from protein sequence alignments.
    Hannenhalli SS, Russell RB.
    J Mol Biol; 2000 Oct 13; 303(1):61-76. PubMed ID: 11021970
    [Abstract] [Full Text] [Related]

  • 18. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR.
    Syst Biol; 2012 Jan 13; 61(1):90-106. PubMed ID: 22139466
    [Abstract] [Full Text] [Related]

  • 19. Use of residue pairs in protein sequence-sequence and sequence-structure alignments.
    Jung J, Lee B.
    Protein Sci; 2000 Aug 13; 9(8):1576-88. PubMed ID: 10975579
    [Abstract] [Full Text] [Related]

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