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506 related items for PubMed ID: 9126848

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  • 8. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
    Efremov RG, Nolde DE, Vergoten G, Arseniev AS.
    Biophys J; 1999 May; 76(5):2448-59. PubMed ID: 10233062
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  • 9. Estimating protein-ligand binding free energy: atomic solvation parameters for partition coefficient and solvation free energy calculation.
    Pei J, Wang Q, Zhou J, Lai L.
    Proteins; 2004 Dec 01; 57(4):651-64. PubMed ID: 15390269
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  • 10. Applicability of a continuum solvation model to the octanol water transfer: CFF91 based model for amino acids.
    Schmidt AB, Fine RM.
    Biopolymers; 1995 Nov 01; 36(5):599-605. PubMed ID: 7578951
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  • 11. Structural features of protein-nucleic acid recognition sites.
    Nadassy K, Wodak SJ, Janin J.
    Biochemistry; 1999 Feb 16; 38(7):1999-2017. PubMed ID: 10026283
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  • 12. Predicting proteinase specificities from free energy calculations.
    Mekonnen SM, Olufsen M, Smalås AO, Brandsdal BO.
    J Mol Graph Model; 2006 Oct 16; 25(2):176-85. PubMed ID: 16386933
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  • 13. A novel serine protease inhibition motif involving a multi-centered short hydrogen bonding network at the active site.
    Katz BA, Elrod K, Luong C, Rice MJ, Mackman RL, Sprengeler PA, Spencer J, Hataye J, Janc J, Link J, Litvak J, Rai R, Rice K, Sideris S, Verner E, Young W.
    J Mol Biol; 2001 Apr 13; 307(5):1451-86. PubMed ID: 11292354
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  • 14. Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy.
    Guvench O, Weiser J, Shenkin P, Kolossváry I, Still WC.
    J Comput Chem; 2002 Jan 30; 23(2):214-21. PubMed ID: 11924735
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  • 15. Hydration free energies of amino acids: why side chain analog data are not enough.
    König G, Boresch S.
    J Phys Chem B; 2009 Jul 02; 113(26):8967-74. PubMed ID: 19507836
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  • 16. Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides.
    Pitera JW, Kollman PA.
    Proteins; 2000 Nov 15; 41(3):385-97. PubMed ID: 11025549
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  • 17. Continuum electrostatic analysis of preferred solvation sites around proteins in solution.
    Dennis S, Camacho CJ, Vajda S.
    Proteins; 2000 Feb 01; 38(2):176-88. PubMed ID: 10656264
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  • 18. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN, Almagro JC, Hermans J.
    Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412
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  • 19. Calculation of the free energy of solvation for neutral analogs of amino acid side chains.
    Villa A, Mark AE.
    J Comput Chem; 2002 Apr 15; 23(5):548-53. PubMed ID: 11948581
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  • 20. Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases.
    Qasim MA, Lu SM, Ding J, Bateman KS, James MN, Anderson S, Song J, Markley JL, Ganz PJ, Saunders CW, Laskowski M.
    Biochemistry; 1999 Jun 01; 38(22):7142-50. PubMed ID: 10353824
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