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Journal Abstract Search

115 related items for PubMed ID: 9159479

  • 21. The nature of the free energy barriers to two-state folding.
    Akmal A, Muñoz V.
    Proteins; 2004 Oct 01; 57(1):142-52. PubMed ID: 15326600
    [Abstract] [Full Text] [Related]

  • 22. On removal of charge singularity in Poisson-Boltzmann equation.
    Cai Q, Wang J, Zhao HK, Luo R.
    J Chem Phys; 2009 Apr 14; 130(14):145101. PubMed ID: 19368474
    [Abstract] [Full Text] [Related]

  • 23. Hydrophobic core substitutions in calbindin D9k: effects on stability and structure.
    Julenius K, Thulin E, Linse S, Finn BE.
    Biochemistry; 1998 Jun 23; 37(25):8915-25. PubMed ID: 9636033
    [Abstract] [Full Text] [Related]

  • 24. Solvation parameters for predicting the structure of surface loops in proteins: transferability and entropic effects.
    Das B, Meirovitch H.
    Proteins; 2003 May 15; 51(3):470-83. PubMed ID: 12696057
    [Abstract] [Full Text] [Related]

  • 25. Quantitative evaluation of the chicken lysozyme epitope in the HyHEL-10 Fab complex: free energies and kinetics.
    Rajpal A, Taylor MG, Kirsch JF.
    Protein Sci; 1998 Sep 15; 7(9):1868-74. PubMed ID: 9761468
    [Abstract] [Full Text] [Related]

  • 26. Crystal structures of K33 mutant hen lysozymes with enhanced activities.
    Goto T, Ohkuri T, Shioi S, Abe Y, Imoto T, Ueda T.
    J Biochem; 2008 Nov 15; 144(5):619-23. PubMed ID: 18776207
    [Abstract] [Full Text] [Related]

  • 27. On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5.
    Novotny J, Bruccoleri RE, Saul FA.
    Biochemistry; 1989 May 30; 28(11):4735-49. PubMed ID: 2475171
    [Abstract] [Full Text] [Related]

  • 28. A new force field (ECEPP-05) for peptides, proteins, and organic molecules.
    Arnautova YA, Jagielska A, Scheraga HA.
    J Phys Chem B; 2006 Mar 16; 110(10):5025-44. PubMed ID: 16526746
    [Abstract] [Full Text] [Related]

  • 29. Protein-inhibitor flexible docking by a multicanonical sampling: native complex structure with the lowest free energy and a free-energy barrier distinguishing the native complex from the others.
    Kamiya N, Yonezawa Y, Nakamura H, Higo J.
    Proteins; 2008 Jan 01; 70(1):41-53. PubMed ID: 17636570
    [Abstract] [Full Text] [Related]

  • 30. Thermodynamic effects of proline introduction on protein stability.
    Prajapati RS, Das M, Sreeramulu S, Sirajuddin M, Srinivasan S, Krishnamurthy V, Ranjani R, Ramakrishnan C, Varadarajan R.
    Proteins; 2007 Feb 01; 66(2):480-91. PubMed ID: 17034035
    [Abstract] [Full Text] [Related]

  • 31. Specific empirical free energy function for automated docking of carbohydrates to proteins.
    Laederach A, Reilly PJ.
    J Comput Chem; 2003 Nov 15; 24(14):1748-57. PubMed ID: 12964193
    [Abstract] [Full Text] [Related]

  • 32. Molecular modeling calculations of HIV-1 reverse transcriptase nonnucleoside inhibitors: correlation of binding energy with biological activity for novel 2-aryl-substituted benzimidazole analogues.
    Kroeger Smith MB, Hose BM, Hawkins A, Lipchock J, Farnsworth DW, Rizzo RC, Tirado-Rives J, Arnold E, Zhang W, Hughes SH, Jorgensen WL, Michejda CJ, Smith RH.
    J Med Chem; 2003 May 08; 46(10):1940-7. PubMed ID: 12723956
    [Abstract] [Full Text] [Related]

  • 33. Large-scale prediction of protein geometry and stability changes for arbitrary single point mutations.
    Bordner AJ, Abagyan RA.
    Proteins; 2004 Nov 01; 57(2):400-13. PubMed ID: 15340927
    [Abstract] [Full Text] [Related]

  • 34. QM/MM-PBSA method to estimate free energies for reactions in proteins.
    Kaukonen M, Söderhjelm P, Heimdal J, Ryde U.
    J Phys Chem B; 2008 Oct 02; 112(39):12537-48. PubMed ID: 18781715
    [Abstract] [Full Text] [Related]

  • 35. Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: a model system for analysis of solute effects on protein processes.
    Felitsky DJ, Record MT.
    Biochemistry; 2003 Feb 25; 42(7):2202-17. PubMed ID: 12590610
    [Abstract] [Full Text] [Related]

  • 36. Reaction pathways and free energy barriers for alkaline hydrolysis of insecticide 2-trimethylammonioethyl methylphosphonofluoridate and related organophosphorus compounds: electrostatic and steric effects.
    Xiong Y, Zhan CG.
    J Org Chem; 2004 Nov 26; 69(24):8451-8. PubMed ID: 15549820
    [Abstract] [Full Text] [Related]

  • 37.
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  • 38. Prediction of the orientations of adsorbed protein using an empirical energy function with implicit solvation.
    Sun Y, Welsh WJ, Latour RA.
    Langmuir; 2005 Jun 07; 21(12):5616-26. PubMed ID: 15924498
    [Abstract] [Full Text] [Related]

  • 39. Validation of an automated procedure for the prediction of relative free energies of binding on a set of aldose reductase inhibitors.
    Ferrari AM, Degliesposti G, Sgobba M, Rastelli G.
    Bioorg Med Chem; 2007 Dec 15; 15(24):7865-77. PubMed ID: 17870536
    [Abstract] [Full Text] [Related]

  • 40. Affinity maturation increases the stability and plasticity of the Fv domain of anti-protein antibodies.
    Acierno JP, Braden BC, Klinke S, Goldbaum FA, Cauerhff A.
    J Mol Biol; 2007 Nov 16; 374(1):130-46. PubMed ID: 17916365
    [Abstract] [Full Text] [Related]

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