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Journal Abstract Search

216 related items for PubMed ID: 9199403

  • 1. RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin.
    Auffinger P, Westhof E.
    J Mol Biol; 1997 Jun 13; 269(3):326-41. PubMed ID: 9199403
    [Abstract] [Full Text] [Related]

  • 2. Molecular dynamics simulations of solvated yeast tRNA(Asp).
    Auffinger P, Louise-May S, Westhof E.
    Biophys J; 1999 Jan 13; 76(1 Pt 1):50-64. PubMed ID: 9876122
    [Abstract] [Full Text] [Related]

  • 3. Water and ion binding around RNA and DNA (C,G) oligomers.
    Auffinger P, Westhof E.
    J Mol Biol; 2000 Jul 28; 300(5):1113-31. PubMed ID: 10903858
    [Abstract] [Full Text] [Related]

  • 4. H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations.
    Auffinger P, Westhof E.
    Biophys J; 1996 Aug 28; 71(2):940-54. PubMed ID: 8842234
    [Abstract] [Full Text] [Related]

  • 5. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.
    Auffinger P, Westhof E.
    J Mol Biol; 2001 Feb 02; 305(5):1057-72. PubMed ID: 11162114
    [Abstract] [Full Text] [Related]

  • 6. Yeast aspartyl-tRNA synthetase residues interacting with tRNA(Asp) identity bases connectively contribute to tRNA(Asp) binding in the ground and transition-state complex and discriminate against non-cognate tRNAs.
    Eriani G, Gangloff J.
    J Mol Biol; 1999 Aug 27; 291(4):761-73. PubMed ID: 10452887
    [Abstract] [Full Text] [Related]

  • 7. Rules governing the orientation of the 2'-hydroxyl group in RNA.
    Auffinger P, Westhof E.
    J Mol Biol; 1997 Nov 21; 274(1):54-63. PubMed ID: 9398515
    [Abstract] [Full Text] [Related]

  • 8. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997 Nov 21; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 9. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
    Spacková N, Réblová K, Sponer J.
    J Phys Chem B; 2010 Aug 19; 114(32):10581-93. PubMed ID: 20701388
    [Abstract] [Full Text] [Related]

  • 10. The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain.
    Sauter C, Lorber B, Cavarelli J, Moras D, Giegé R.
    J Mol Biol; 2000 Jun 23; 299(5):1313-24. PubMed ID: 10873455
    [Abstract] [Full Text] [Related]

  • 11. Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs.
    Becker HF, Motorin Y, Sissler M, Florentz C, Grosjean H.
    J Mol Biol; 1997 Dec 12; 274(4):505-18. PubMed ID: 9417931
    [Abstract] [Full Text] [Related]

  • 12. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
    Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF.
    J Mol Biol; 1998 Oct 02; 282(4):859-73. PubMed ID: 9743632
    [Abstract] [Full Text] [Related]

  • 13. A molecular dynamics simulation of the flavin mononucleotide-RNA aptamer complex.
    Schneider C, Sühnel J.
    Biopolymers; 1999 Sep 02; 50(3):287-302. PubMed ID: 10397790
    [Abstract] [Full Text] [Related]

  • 14. Molecular dynamics study of water penetration in staphylococcal nuclease.
    Damjanović A, García-Moreno B, Lattman EE, García AE.
    Proteins; 2005 Aug 15; 60(3):433-49. PubMed ID: 15971206
    [Abstract] [Full Text] [Related]

  • 15. Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
    Cabello-Villegas J, Winkler ME, Nikonowicz EP.
    J Mol Biol; 2002 Jun 21; 319(5):1015-34. PubMed ID: 12079344
    [Abstract] [Full Text] [Related]

  • 16. Molecular dynamics of the anticodon domain of yeast tRNA(Phe): codon-anticodon interaction.
    Lahiri A, Nilsson L.
    Biophys J; 2000 Nov 21; 79(5):2276-89. PubMed ID: 11053108
    [Abstract] [Full Text] [Related]

  • 17. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
    Csaszar K, Spacková N, Stefl R, Sponer J, Leontis NB.
    J Mol Biol; 2001 Nov 09; 313(5):1073-91. PubMed ID: 11700064
    [Abstract] [Full Text] [Related]

  • 18. Analysis of sequence dependent variations in secondary and tertiary structure of tRNA molecules.
    Bhattacharyya D, Bansal M.
    J Biomol Struct Dyn; 1994 Jun 09; 11(6):1251-75. PubMed ID: 7946073
    [Abstract] [Full Text] [Related]

  • 19. Statistical analysis of atomic contacts at RNA-protein interfaces.
    Treger M, Westhof E.
    J Mol Recognit; 2001 Jun 09; 14(4):199-214. PubMed ID: 11500966
    [Abstract] [Full Text] [Related]

  • 20. Base pairing within the psi32,psi39-modified anticodon arm of Escherichia coli tRNA(Phe).
    Tworowska I, Nikonowicz EP.
    J Am Chem Soc; 2006 Dec 13; 128(49):15570-1. PubMed ID: 17147349
    [Abstract] [Full Text] [Related]

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