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Journal Abstract Search

457 related items for PubMed ID: 9199410

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  • 2. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
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  • 6. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
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  • 8. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
    Wilson CA, Kreychman J, Gerstein M.
    J Mol Biol; 2000 Mar 17; 297(1):233-49. PubMed ID: 10704319
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  • 9. Assessment of the probabilities for evolutionary structural changes in protein folds.
    Viksna J, Gilbert D.
    Bioinformatics; 2007 Apr 01; 23(7):832-41. PubMed ID: 17282999
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  • 10. Recognition of analogous and homologous protein folds--assessment of prediction success and associated alignment accuracy using empirical substitution matrices.
    Russell RB, Saqi MA, Bates PA, Sayle RA, Sternberg MJ.
    Protein Eng; 1998 Jan 01; 11(1):1-9. PubMed ID: 9579654
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  • 11. Template-based recognition of protein fold within the midnight and twilight zones of protein sequence similarity.
    Pirun M, Babnigg G, Stevens FJ.
    J Mol Recognit; 2005 Jan 01; 18(3):203-12. PubMed ID: 15540237
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  • 13. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    Shi J, Blundell TL, Mizuguchi K.
    J Mol Biol; 2001 Jun 29; 310(1):243-57. PubMed ID: 11419950
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  • 14. Protein structure alignment considering phenotypic plasticity.
    Csaba G, Birzele F, Zimmer R.
    Bioinformatics; 2008 Aug 15; 24(16):i98-104. PubMed ID: 18689847
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  • 15. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):665-78. PubMed ID: 10966776
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  • 16. Remote protein homology detection and fold recognition using two-layer support vector machine classifiers.
    Muda HM, Saad P, Othman RM.
    Comput Biol Med; 2011 Aug 18; 41(8):687-99. PubMed ID: 21704312
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  • 17. Do aligned sequences share the same fold?
    Abagyan RA, Batalov S.
    J Mol Biol; 1997 Oct 17; 273(1):355-68. PubMed ID: 9367768
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  • 18. Pairwise sequence alignment below the twilight zone.
    Blake JD, Cohen FE.
    J Mol Biol; 2001 Mar 23; 307(2):721-35. PubMed ID: 11254392
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  • 19. Protein structure comparison using the markov transition model of evolution.
    Kawabata T, Nishikawa K.
    Proteins; 2000 Oct 01; 41(1):108-22. PubMed ID: 10944398
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  • 20. Protein fold recognition by prediction-based threading.
    Rost B, Schneider R, Sander C.
    J Mol Biol; 1997 Jul 18; 270(3):471-80. PubMed ID: 9237912
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