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Journal Abstract Search

205 related items for PubMed ID: 9336170

  • 21. Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact.
    Coleman BD, Swigon D, Tobias I.
    Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics; 2000 Jan; 61(1):759-70. PubMed ID: 11046320
    [Abstract] [Full Text] [Related]

  • 22. Polymer induced condensation of DNA supercoils.
    Ramos JE, Neto JR, de Vries R.
    J Chem Phys; 2008 Nov 14; 129(18):185102. PubMed ID: 19045430
    [Abstract] [Full Text] [Related]

  • 23. Computer simulation of protein-induced structural changes in closed circular DNA.
    Zhang P, Tobias I, Olson WK.
    J Mol Biol; 1994 Sep 23; 242(3):271-90. PubMed ID: 8089847
    [Abstract] [Full Text] [Related]

  • 24. Conformational response of supercoiled DNA to confinement in a nanochannel.
    Lim W, Ng SY, Lee C, Feng YP, van der Maarel JR.
    J Chem Phys; 2008 Oct 28; 129(16):165102. PubMed ID: 19045317
    [Abstract] [Full Text] [Related]

  • 25. Electrostatic-undulatory theory of plectonemically supercoiled DNA.
    Ubbink J, Odijk T.
    Biophys J; 1999 May 28; 76(5):2502-19. PubMed ID: 10233067
    [Abstract] [Full Text] [Related]

  • 26. Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy.
    Brouns T, De Keersmaecker H, Konrad SF, Kodera N, Ando T, Lipfert J, De Feyter S, Vanderlinden W.
    ACS Nano; 2018 Dec 26; 12(12):11907-11916. PubMed ID: 30346700
    [Abstract] [Full Text] [Related]

  • 27. Brownian dynamics simulation of DNA condensation.
    Sottas PE, Larquet E, Stasiak A, Dubochet J.
    Biophys J; 1999 Oct 26; 77(4):1858-70. PubMed ID: 10512808
    [Abstract] [Full Text] [Related]

  • 28. The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation.
    Rybenkov VV, Vologodskii AV, Cozzarelli NR.
    J Mol Biol; 1997 Mar 28; 267(2):312-23. PubMed ID: 9096228
    [Abstract] [Full Text] [Related]

  • 29. Evaluating changes of writhe in computer simulations of supercoiled DNA.
    de Vries R.
    J Chem Phys; 2005 Feb 08; 122(6):064905. PubMed ID: 15740406
    [Abstract] [Full Text] [Related]

  • 30. Monte Carlo simulations of locally melted supercoiled DNAs in 20 mM ionic strength.
    Sucato CA, Rangel DP, Aspleaf D, Fujimoto BS, Schurr JM.
    Biophys J; 2004 May 08; 86(5):3079-96. PubMed ID: 15111422
    [Abstract] [Full Text] [Related]

  • 31. Monte Carlo implementation of supercoiled double-stranded DNA.
    Yang Z, Haijun Z, Zhong-Can OY.
    Biophys J; 2000 Apr 08; 78(4):1979-87. PubMed ID: 10733976
    [Abstract] [Full Text] [Related]

  • 32. Computer simulation of DNA supercoiling.
    Klenin KV, Vologodskii AV, Anshelevich VV, Dykhne AM, Frank-Kamenetskii MD.
    J Mol Biol; 1991 Feb 05; 217(3):413-9. PubMed ID: 1994032
    [Abstract] [Full Text] [Related]

  • 33. The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo.
    Bednar J, Furrer P, Stasiak A, Dubochet J, Egelman EH, Bates AD.
    J Mol Biol; 1994 Jan 21; 235(3):825-47. PubMed ID: 8289322
    [Abstract] [Full Text] [Related]

  • 34. Modeling superhelical DNA: recent analytical and dynamic approaches.
    Schlick T.
    Curr Opin Struct Biol; 1995 Apr 21; 5(2):245-62. PubMed ID: 7648328
    [Abstract] [Full Text] [Related]

  • 35. Monte Carlo simulations of supercoiled DNAs confined to a plane.
    Fujimoto BS, Schurr JM.
    Biophys J; 2002 Feb 21; 82(2):944-62. PubMed ID: 11806935
    [Abstract] [Full Text] [Related]

  • 36. Modeling Bacterial DNA: Simulation of Self-Avoiding Supercoiled Worm-Like Chains Including Structural Transitions of the Helix.
    Lepage T, Junier I.
    Methods Mol Biol; 2017 Feb 21; 1624():323-337. PubMed ID: 28842893
    [Abstract] [Full Text] [Related]

  • 37. Molecular dynamics simulations of small DNA plasmids: effects of sequence and supercoiling on intramolecular motions.
    Tan RK, Sprous D, Harvey SC.
    Biopolymers; 1996 Aug 21; 39(2):259-78. PubMed ID: 8679953
    [Abstract] [Full Text] [Related]

  • 38. Modeling DNA supercoils and knots with B-spline functions.
    Hao MH, Olson WK.
    Biopolymers; 1989 Apr 21; 28(4):873-900. PubMed ID: 2720128
    [Abstract] [Full Text] [Related]

  • 39. Salt effects on the structure and internal dynamics of superhelical DNAs studied by light scattering and Brownian dynamics.
    Hammermann M, Steinmaier C, Merlitz H, Kapp U, Waldeck W, Chirico G, Langowski J.
    Biophys J; 1997 Nov 21; 73(5):2674-87. PubMed ID: 9370461
    [Abstract] [Full Text] [Related]

  • 40. Structure of plectonemically supercoiled DNA.
    Boles TC, White JH, Cozzarelli NR.
    J Mol Biol; 1990 Jun 20; 213(4):931-51. PubMed ID: 2359128
    [Abstract] [Full Text] [Related]

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