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Journal Abstract Search

126 related items for PubMed ID: 9390240

  • 1. Assessing the performance of fold recognition methods by means of a comprehensive benchmark.
    Fischer D, Elofsson A, Rice D, Eisenberg D.
    Pac Symp Biocomput; 1996; ():300-18. PubMed ID: 9390240
    [Abstract] [Full Text] [Related]

  • 2. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
    [Abstract] [Full Text] [Related]

  • 3. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS, Lackner P, Andreeva A, Sippl MJ.
    J Mol Biol; 2000 Apr 07; 297(4):1003-13. PubMed ID: 10736233
    [Abstract] [Full Text] [Related]

  • 4. Do aligned sequences share the same fold?
    Abagyan RA, Batalov S.
    J Mol Biol; 1997 Oct 17; 273(1):355-68. PubMed ID: 9367768
    [Abstract] [Full Text] [Related]

  • 5. Protein fold recognition using sequence-derived predictions.
    Fischer D, Eisenberg D.
    Protein Sci; 1996 May 17; 5(5):947-55. PubMed ID: 8732766
    [Abstract] [Full Text] [Related]

  • 6. Hidden Markov models that use predicted secondary structures for fold recognition.
    Hargbo J, Elofsson A.
    Proteins; 1999 Jul 01; 36(1):68-76. PubMed ID: 10373007
    [Abstract] [Full Text] [Related]

  • 7. Protein fold recognition by prediction-based threading.
    Rost B, Schneider R, Sander C.
    J Mol Biol; 1997 Jul 18; 270(3):471-80. PubMed ID: 9237912
    [Abstract] [Full Text] [Related]

  • 8. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
    [Abstract] [Full Text] [Related]

  • 9. Multiple sequence threading: an analysis of alignment quality and stability.
    Taylor WR.
    J Mol Biol; 1997 Jun 27; 269(5):902-43. PubMed ID: 9223650
    [Abstract] [Full Text] [Related]

  • 10. DPANN: improved sequence to structure alignments following fold recognition.
    Reinhardt A, Eisenberg D.
    Proteins; 2004 Aug 15; 56(3):528-38. PubMed ID: 15229885
    [Abstract] [Full Text] [Related]

  • 11. Using the radial distributions of physical features to compare amino acid environments and align amino acid sequences.
    Wei L, Altman RB, Chang JT.
    Pac Symp Biocomput; 1997 Aug 15; ():465-76. PubMed ID: 9390315
    [Abstract] [Full Text] [Related]

  • 12. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
    Thompson JD, Koehl P, Ripp R, Poch O.
    Proteins; 2005 Oct 01; 61(1):127-36. PubMed ID: 16044462
    [Abstract] [Full Text] [Related]

  • 13. A machine learning information retrieval approach to protein fold recognition.
    Cheng J, Baldi P.
    Bioinformatics; 2006 Jun 15; 22(12):1456-63. PubMed ID: 16547073
    [Abstract] [Full Text] [Related]

  • 14. Protein structure mining using a structural alphabet.
    Tyagi M, de Brevern AG, Srinivasan N, Offmann B.
    Proteins; 2008 May 01; 71(2):920-37. PubMed ID: 18004784
    [Abstract] [Full Text] [Related]

  • 15. FROST: a filter-based fold recognition method.
    Marin A, Pothier J, Zimmermann K, Gibrat JF.
    Proteins; 2002 Dec 01; 49(4):493-509. PubMed ID: 12402359
    [Abstract] [Full Text] [Related]

  • 16. Fast protein fold recognition via sequence to structure alignment and contact capacity potentials.
    Alexandrov NN, Nussinov R, Zimmer RM.
    Pac Symp Biocomput; 1996 Dec 01; ():53-72. PubMed ID: 9390223
    [Abstract] [Full Text] [Related]

  • 17. Comparison of the efficiency of evolutionary change-based and side chain orientation-based fold recognition potentials.
    Vishnepolsky B, Managadze G, Pirtskhalava M.
    Proteins; 2008 Jun 01; 71(4):1863-78. PubMed ID: 18175309
    [Abstract] [Full Text] [Related]

  • 18. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G, Takeda-Shitaka M.
    PLoS One; 2015 Jun 01; 10(10):e0141440. PubMed ID: 26502070
    [Abstract] [Full Text] [Related]

  • 19. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH, Huang H, Kihara D.
    Proteins; 2006 Aug 15; 64(3):587-600. PubMed ID: 16799934
    [Abstract] [Full Text] [Related]

  • 20. Fold recognition by concurrent use of solvent accessibility and residue depth.
    Liu S, Zhang C, Liang S, Zhou Y.
    Proteins; 2007 Aug 15; 68(3):636-45. PubMed ID: 17510969
    [Abstract] [Full Text] [Related]

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