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Journal Abstract Search

337 related items for PubMed ID: 9396800

  • 1. NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions.
    Luscombe NM, Laskowski RA, Thornton JM.
    Nucleic Acids Res; 1997 Dec 15; 25(24):4940-5. PubMed ID: 9396800
    [Abstract] [Full Text] [Related]

  • 2. NuProPlot: nucleic acid and protein interaction analysis and plotting program.
    Pradhan L, Nam HJ.
    Acta Crystallogr D Biol Crystallogr; 2015 Mar 15; 71(Pt 3):667-74. PubMed ID: 25760613
    [Abstract] [Full Text] [Related]

  • 3. DNA bending: the prevalence of kinkiness and the virtues of normality.
    Dickerson RE.
    Nucleic Acids Res; 1998 Apr 15; 26(8):1906-26. PubMed ID: 9518483
    [Abstract] [Full Text] [Related]

  • 4. Molecular dynamics simulation in solvent of the bacteriophage 434 cI repressor protein DNA binding domain amino acids (R1-69) in complex with its cognate operator (OR1) DNA sequence.
    Harris LF, Sullivan MR, Popken-Harris PD.
    J Biomol Struct Dyn; 1999 Aug 15; 17(1):1-17. PubMed ID: 10496417
    [Abstract] [Full Text] [Related]

  • 5. [Definitive role of polar residue clusters in B-DNA major groove recognition by protein factors].
    Chirgadze IuN, Larionova EA.
    Mol Biol (Mosk); 2003 Aug 15; 37(2):266-76. PubMed ID: 12723474
    [Abstract] [Full Text] [Related]

  • 6. Targeting of nucleic acids by iron complexes.
    Draganescu A, Tullius TD.
    Met Ions Biol Syst; 1996 Aug 15; 33():453-84. PubMed ID: 8742852
    [No Abstract] [Full Text] [Related]

  • 7. MONTY: a Monte Carlo approach to protein-DNA recognition.
    Knegtel RM, Antoon J, Rullmann C, Boelens R, Kaptein R.
    J Mol Biol; 1994 Jan 07; 235(1):318-24. PubMed ID: 8289251
    [Abstract] [Full Text] [Related]

  • 8. Repetitive use of a phosphate-binding module in DNA polymerase beta, Oct-1 POU domain and phage repressors.
    Yura K, Shionyu M, Kawatani K, Go M.
    Cell Mol Life Sci; 1999 Mar 07; 55(3):472-86. PubMed ID: 10228561
    [Abstract] [Full Text] [Related]

  • 9. DBBP: database of binding pairs in protein-nucleic acid interactions.
    Park B, Kim H, Han K.
    BMC Bioinformatics; 2014 Mar 07; 15 Suppl 15(Suppl 15):S5. PubMed ID: 25474259
    [Abstract] [Full Text] [Related]

  • 10. Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure.
    Lejeune D, Delsaux N, Charloteaux B, Thomas A, Brasseur R.
    Proteins; 2005 Nov 01; 61(2):258-71. PubMed ID: 16121397
    [Abstract] [Full Text] [Related]

  • 11. Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and experimental data.
    Knegtel RM, Boelens R, Kaptein R.
    Protein Eng; 1994 Jun 01; 7(6):761-7. PubMed ID: 7937706
    [Abstract] [Full Text] [Related]

  • 12. Induced structural changes in protein-DNA complexes.
    Kyogoku Y, Kojima C, Lee SJ, Tochio H, Suzuki N, Matsuo H, Shirakawa M.
    Methods Enzymol; 1995 Jun 01; 261():524-41. PubMed ID: 8569510
    [No Abstract] [Full Text] [Related]

  • 13. Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution.
    Albright RA, Matthews BW.
    J Mol Biol; 1998 Jul 03; 280(1):137-51. PubMed ID: 9653037
    [Abstract] [Full Text] [Related]

  • 14. Binding mechanisms of TATA box-binding proteins: DNA kinking is stabilized by specific hydrogen bonds.
    Pardo L, Campillo M, Bosch D, Pastor N, Weinstein H.
    Biophys J; 2000 Apr 03; 78(4):1988-96. PubMed ID: 10733977
    [Abstract] [Full Text] [Related]

  • 15. Structure of a phage 434 Cro/DNA complex.
    Wolberger C, Dong YC, Ptashne M, Harrison SC.
    Nature; 1988 Oct 27; 335(6193):789-95. PubMed ID: 3185709
    [Abstract] [Full Text] [Related]

  • 16. Arc repressor-operator DNA interactions and contribution of Phe10 to binding specificity.
    Dostál L, Misselwitz R, Welfle H.
    Biochemistry; 2005 Jun 14; 44(23):8387-96. PubMed ID: 15938628
    [Abstract] [Full Text] [Related]

  • 17. Role of aromatic amino acids in protein-nucleic acid recognition.
    Baker CM, Grant GH.
    Biopolymers; 2005 Jun 14; 85(5-6):456-70. PubMed ID: 17219397
    [Abstract] [Full Text] [Related]

  • 18. Structure-based analysis of protein-RNA interactions using the program ENTANGLE.
    Allers J, Shamoo Y.
    J Mol Biol; 2001 Aug 03; 311(1):75-86. PubMed ID: 11469858
    [Abstract] [Full Text] [Related]

  • 19. NPDock: a web server for protein-nucleic acid docking.
    Tuszynska I, Magnus M, Jonak K, Dawson W, Bujnicki JM.
    Nucleic Acids Res; 2015 Jul 01; 43(W1):W425-30. PubMed ID: 25977296
    [Abstract] [Full Text] [Related]

  • 20. Protein-RNA interactions: a structural analysis.
    Jones S, Daley DT, Luscombe NM, Berman HM, Thornton JM.
    Nucleic Acids Res; 2001 Feb 15; 29(4):943-54. PubMed ID: 11160927
    [Abstract] [Full Text] [Related]

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