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Journal Abstract Search

124 related items for PubMed ID: 9399866

  • 1. An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data.
    Adzhubei IA, Adzhubei AA, Neidle S.
    Nucleic Acids Res; 1998 Jan 01; 26(1):327-31. PubMed ID: 9399866
    [Abstract] [Full Text] [Related]

  • 2. ISSD Version 2.0: taxonomic range extended.
    Adzhubei IA, Adzhubei AA.
    Nucleic Acids Res; 1999 Jan 01; 27(1):268-71. PubMed ID: 9847198
    [Abstract] [Full Text] [Related]

  • 3. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

  • 4. Database of homology-derived protein structures and the structural meaning of sequence alignment.
    Sander C, Schneider R.
    Proteins; 1991 Feb 15; 9(1):56-68. PubMed ID: 2017436
    [Abstract] [Full Text] [Related]

  • 5. Statistical correlation between protein secondary structure and messenger RNA stem-loop structure.
    Jia M, Luo L, Liu C.
    Biopolymers; 2004 Jan 15; 73(1):16-26. PubMed ID: 14691936
    [Abstract] [Full Text] [Related]

  • 6. NRL-3D: a sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment.
    Pattabiraman N, Namboodiri K, Lowrey A, Gaber BP.
    Protein Seq Data Anal; 1990 Oct 15; 3(5):387-405. PubMed ID: 2259697
    [Abstract] [Full Text] [Related]

  • 7. Modeling protein loops using a phi i + 1, psi i dimer database.
    Sudarsanam S, DuBose RF, March CJ, Srinivasan S.
    Protein Sci; 1995 Jul 15; 4(7):1412-20. PubMed ID: 7670382
    [Abstract] [Full Text] [Related]

  • 8. Protein similarity search under mRNA structural constraints: application to targeted selenocysteine insertion.
    Backofen R, Narayanaswamy NS, Swidan F.
    In Silico Biol; 2002 Jul 15; 2(3):275-90. PubMed ID: 12542413
    [Abstract] [Full Text] [Related]

  • 9. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL, Ji L, Li YD.
    Yi Chuan Xue Bao; 2004 May 15; 31(5):431-43. PubMed ID: 15478601
    [Abstract] [Full Text] [Related]

  • 10. Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks.
    Hirst JD, Sternberg MJ.
    Biochemistry; 1992 Aug 18; 31(32):7211-8. PubMed ID: 1510913
    [Abstract] [Full Text] [Related]

  • 11. Studies on the relationships between the synonymous codon usage and protein secondary structural units.
    Gupta SK, Majumdar S, Bhattacharya TK, Ghosh TC.
    Biochem Biophys Res Commun; 2000 Mar 24; 269(3):692-6. PubMed ID: 10720478
    [Abstract] [Full Text] [Related]

  • 12. Nucleotide and amino acid sequence analysis of the rotavirus nonstructural RNA-binding protein NS35.
    Patton JT, Salter-Cid L, Kalbach A, Mansell EA, Kattoura M.
    Virology; 1993 Feb 24; 192(2):438-46. PubMed ID: 8380660
    [Abstract] [Full Text] [Related]

  • 13. Non-random usage of 'degenerate' codons is related to protein three-dimensional structure.
    Adzhubei AA, Adzhubei IA, Krasheninnikov IA, Neidle S.
    FEBS Lett; 1996 Dec 09; 399(1-2):78-82. PubMed ID: 8980124
    [Abstract] [Full Text] [Related]

  • 14. The HSSP database of protein structure-sequence alignments.
    Schneider R, Sander C.
    Nucleic Acids Res; 1996 Jan 01; 24(1):201-5. PubMed ID: 8594579
    [Abstract] [Full Text] [Related]

  • 15. Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
    Ouzounis C, Sander C, Scharf M, Schneider R.
    J Mol Biol; 1993 Aug 05; 232(3):805-25. PubMed ID: 8355272
    [Abstract] [Full Text] [Related]

  • 16. Correlation between nucleotide composition and folding energy of coding sequences with special attention to wobble bases.
    Biro JC.
    Theor Biol Med Model; 2008 Jul 29; 5():14. PubMed ID: 18664268
    [Abstract] [Full Text] [Related]

  • 17. SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments.
    Gough J, Chothia C.
    Nucleic Acids Res; 2002 Jan 01; 30(1):268-72. PubMed ID: 11752312
    [Abstract] [Full Text] [Related]

  • 18. Specific correlations between relative synonymous codon usage and protein secondary structure.
    Oresic M, Shalloway D.
    J Mol Biol; 1998 Aug 07; 281(1):31-48. PubMed ID: 9680473
    [Abstract] [Full Text] [Related]

  • 19.
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  • 20. The HSSP database of protein structure-sequence alignments.
    Schneider R, de Daruvar A, Sander C.
    Nucleic Acids Res; 1997 Jan 01; 25(1):226-30. PubMed ID: 9016541
    [Abstract] [Full Text] [Related]

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