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263 related items for PubMed ID: 9478205

  • 1. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 2. Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
    Durant PC, Davis DR.
    J Mol Biol; 1999 Jan 08; 285(1):115-31. PubMed ID: 9878393
    [Abstract] [Full Text] [Related]

  • 3. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 4. An RNA model system for investigation of pseudouridine stabilization of the codon-anticodon interaction in tRNALys, tRNAHis and tRNATyr.
    Davis DR, Veltri CA, Nielsen L.
    J Biomol Struct Dyn; 1998 Jun 07; 15(6):1121-32. PubMed ID: 9669557
    [Abstract] [Full Text] [Related]

  • 5. Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
    Cabello-Villegas J, Winkler ME, Nikonowicz EP.
    J Mol Biol; 2002 Jun 21; 319(5):1015-34. PubMed ID: 12079344
    [Abstract] [Full Text] [Related]

  • 6. Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs.
    Becker HF, Motorin Y, Sissler M, Florentz C, Grosjean H.
    J Mol Biol; 1997 Dec 12; 274(4):505-18. PubMed ID: 9417931
    [Abstract] [Full Text] [Related]

  • 7. Synthesis and characterization of the native anticodon domain of E. coli TRNA(Lys): simultaneous incorporation of modified nucleosides mnm(5)s(2)U, t(6)A, and pseudouridine using phosphoramidite chemistry.
    Sundaram M, Crain PF, Davis DR.
    J Org Chem; 2000 Sep 08; 65(18):5609-14. PubMed ID: 10970299
    [Abstract] [Full Text] [Related]

  • 8. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Tworowska I, Nikonowicz EP.
    Biochemistry; 2004 Jan 13; 43(1):55-66. PubMed ID: 14705931
    [Abstract] [Full Text] [Related]

  • 9. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure.
    Puglisi EV, Puglisi JD.
    Nat Struct Biol; 1998 Dec 13; 5(12):1033-6. PubMed ID: 9846871
    [Abstract] [Full Text] [Related]

  • 10. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 11. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 12. Tertiary structural analysis of Escherichia coli lysine tRNA.
    Hayashi N, Kawai G, Takayanagi M, Noguchi T, Ueda T, Nishikawa K, Miura K, Miyazawa T, Yokoyama S, Watanabe K.
    Nucleic Acids Symp Ser; 1993 Nov 07; (29):195-6. PubMed ID: 8247766
    [Abstract] [Full Text] [Related]

  • 13. Nucleoside modifications affect the structure and stability of the anticodon of tRNA(Lys,3).
    Davis DR, Durant PC.
    Nucleosides Nucleotides; 1999 Nov 07; 18(6-7):1579-81. PubMed ID: 10474235
    [Abstract] [Full Text] [Related]

  • 14. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 15. A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.
    Koshlap KM, Guenther R, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 1999 Jul 06; 38(27):8647-56. PubMed ID: 10393540
    [Abstract] [Full Text] [Related]

  • 16. Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Nikonowicz EP.
    Nucleic Acids Res; 2005 Jul 06; 33(22):6961-71. PubMed ID: 16377777
    [Abstract] [Full Text] [Related]

  • 17. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 18. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 17; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 19. Base pairing within the psi32,psi39-modified anticodon arm of Escherichia coli tRNA(Phe).
    Tworowska I, Nikonowicz EP.
    J Am Chem Soc; 2006 Dec 13; 128(49):15570-1. PubMed ID: 17147349
    [Abstract] [Full Text] [Related]

  • 20. The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs.
    Bilbille Y, Vendeix FA, Guenther R, Malkiewicz A, Ariza X, Vilarrasa J, Agris PF.
    Nucleic Acids Res; 2009 Jun 13; 37(10):3342-53. PubMed ID: 19324888
    [Abstract] [Full Text] [Related]

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