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Journal Abstract Search

192 related items for PubMed ID: 9533691

  • 1. A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes.
    Klenin K, Merlitz H, Langowski J.
    Biophys J; 1998 Feb; 74(2 Pt 1):780-8. PubMed ID: 9533691
    [Abstract] [Full Text] [Related]

  • 2. Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation.
    Merlitz H, Rippe K, Klenin KV, Langowski J.
    Biophys J; 1998 Feb; 74(2 Pt 1):773-9. PubMed ID: 9533690
    [Abstract] [Full Text] [Related]

  • 3. Brownian dynamics simulation of the diffusion of rods and wormlike chains in a gel modeled as a cubic lattice: application to DNA.
    Pei H, Allison S, Haynes BM, Augustin D.
    J Phys Chem B; 2009 Mar 05; 113(9):2564-71. PubMed ID: 18761431
    [Abstract] [Full Text] [Related]

  • 4. From rigid base pairs to semiflexible polymers: coarse-graining DNA.
    Becker NB, Everaers R.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Aug 05; 76(2 Pt 1):021923. PubMed ID: 17930081
    [Abstract] [Full Text] [Related]

  • 5. Stretching short DNAs in electrolytes.
    Wang J, Fan X, Gao H.
    Mol Cell Biomech; 2006 Mar 05; 3(1):13-9. PubMed ID: 16711068
    [Abstract] [Full Text] [Related]

  • 6. Effect of anisotropy of the bending rigidity on the supercoiling free energy of small circular DNAs.
    Schurr JM, Babcock HP, Gebe JA.
    Biopolymers; 1995 Nov 05; 36(5):633-41. PubMed ID: 7578955
    [Abstract] [Full Text] [Related]

  • 7. Computer simulation of protein-induced structural changes in closed circular DNA.
    Zhang P, Tobias I, Olson WK.
    J Mol Biol; 1994 Sep 23; 242(3):271-90. PubMed ID: 8089847
    [Abstract] [Full Text] [Related]

  • 8. Effect of hydrodynamic interaction on partially stretched polymers.
    Sain A.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Jun 23; 77(6 Pt 1):061919. PubMed ID: 18643312
    [Abstract] [Full Text] [Related]

  • 9. Marked difference in conformational fluctuation between giant DNA molecules in circular and linear forms.
    Iwaki T, Ishido T, Hirano K, Lazutin AA, Vasilevskaya VV, Kenmotsu T, Yoshikawa K.
    J Chem Phys; 2015 Apr 14; 142(14):145101. PubMed ID: 25877594
    [Abstract] [Full Text] [Related]

  • 10. Conformation and trapping rate of DNA at a convergent stagnation point.
    Kreft J, Chen YL, Chang HC.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Mar 14; 77(3 Pt 1):030801. PubMed ID: 18517319
    [Abstract] [Full Text] [Related]

  • 11. Temperature dependence of circular DNA topological states.
    Chen H, Liu Y, Zhou Z, Hu L, Ou-Yang ZC, Yan J.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Apr 14; 79(4 Pt 1):041926. PubMed ID: 19518275
    [Abstract] [Full Text] [Related]

  • 12. Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition.
    Jian H, Schlick T, Vologodskii A.
    J Mol Biol; 1998 Nov 27; 284(2):287-96. PubMed ID: 9813118
    [Abstract] [Full Text] [Related]

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  • 16. Modelling DNA loops using continuum and statistical mechanics.
    Balaeff A, Koudella CR, Mahadevan L, Schulten K.
    Philos Trans A Math Phys Eng Sci; 2004 Jul 15; 362(1820):1355-71. PubMed ID: 15306455
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  • 17. Partial hydrodynamic screening of confined linear and circular double-stranded DNA dynamics.
    Lin PK, Chang JF, Wei CH, Tsao PH, Fann WS, Chen YL.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Sep 15; 84(3 Pt 1):031917. PubMed ID: 22060413
    [Abstract] [Full Text] [Related]

  • 18. Brownian dynamics simulations of probe and self-diffusion in concentrated protein and DNA solutions.
    Dwyer JD, Bloomfield VA.
    Biophys J; 1993 Nov 15; 65(5):1810-6. PubMed ID: 8298014
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  • 20. Efficient Brownian dynamics simulation of DNA molecules with hydrodynamic interactions in linear flows.
    Fu SP, Young YN, Jiang S.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Jun 15; 91(6):063008. PubMed ID: 26172793
    [Abstract] [Full Text] [Related]

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