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319 related items for PubMed ID: 9740131

  • 1. The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure.
    Leontis NB, Westhof E.
    RNA; 1998 Sep; 4(9):1134-53. PubMed ID: 9740131
    [Abstract] [Full Text] [Related]

  • 2. Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules.
    Leontis NB, Stombaugh J, Westhof E.
    Biochimie; 2002 Sep; 84(9):961-73. PubMed ID: 12458088
    [Abstract] [Full Text] [Related]

  • 3. Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.
    Réblová K, Spacková N, Stefl R, Csaszar K, Koca J, Leontis NB, Sponer J.
    Biophys J; 2003 Jun; 84(6):3564-82. PubMed ID: 12770867
    [Abstract] [Full Text] [Related]

  • 4. Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling.
    Brunel C, Romby P, Westhof E, Ehresmann C, Ehresmann B.
    J Mol Biol; 1991 Sep 05; 221(1):293-308. PubMed ID: 1717695
    [Abstract] [Full Text] [Related]

  • 5. The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins.
    Dallas A, Moore PB.
    Structure; 1997 Dec 15; 5(12):1639-53. PubMed ID: 9438864
    [Abstract] [Full Text] [Related]

  • 6. The solution structure of the loop E region of the 5S rRNA from spinach chloroplasts.
    Vallurupalli P, Moore PB.
    J Mol Biol; 2003 Jan 31; 325(5):843-56. PubMed ID: 12527295
    [Abstract] [Full Text] [Related]

  • 7. A proposal for the conformation of loop E in Escherichia coli 5S rRNA.
    Dallas A, Rycyna R, Moore P.
    Biochem Cell Biol; 1995 Jan 31; 73(11-12):887-97. PubMed ID: 8722004
    [Abstract] [Full Text] [Related]

  • 8. How Mg2+ ion and water network affect the stability and structure of non-Watson-Crick base pairs in E. coli loop E of 5S rRNA: a molecular dynamics and reference interaction site model (RISM) study.
    Shanker S, Bandyopadhyay P.
    J Biomol Struct Dyn; 2017 Aug 31; 35(10):2103-2122. PubMed ID: 27426235
    [Abstract] [Full Text] [Related]

  • 9. Direct identification of NH...N hydrogen bonds in non-canonical base pairs of RNA by NMR spectroscopy.
    Wöhnert J, Dingley AJ, Stoldt M, Görlach M, Grzesiek S, Brown LR.
    Nucleic Acids Res; 1999 Aug 01; 27(15):3104-10. PubMed ID: 10454606
    [Abstract] [Full Text] [Related]

  • 10. The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
    Mueller F, Sommer I, Baranov P, Matadeen R, Stoldt M, Wöhnert J, Görlach M, van Heel M, Brimacombe R.
    J Mol Biol; 2000 Apr 21; 298(1):35-59. PubMed ID: 10756104
    [Abstract] [Full Text] [Related]

  • 11. The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.
    Shankar N, Kennedy SD, Chen G, Krugh TR, Turner DH.
    Biochemistry; 2006 Oct 03; 45(39):11776-89. PubMed ID: 17002278
    [Abstract] [Full Text] [Related]

  • 12. Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain.
    Correll CC, Freeborn B, Moore PB, Steitz TA.
    Cell; 1997 Nov 28; 91(5):705-12. PubMed ID: 9393863
    [Abstract] [Full Text] [Related]

  • 13. NMR analysis of helix I from the 5S RNA of Escherichia coli.
    White SA, Nilges M, Huang A, Brünger AT, Moore PB.
    Biochemistry; 1992 Feb 18; 31(6):1610-21. PubMed ID: 1371071
    [Abstract] [Full Text] [Related]

  • 14. Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution.
    Lu M, Steitz TA.
    Proc Natl Acad Sci U S A; 2000 Feb 29; 97(5):2023-8. PubMed ID: 10696113
    [Abstract] [Full Text] [Related]

  • 15. Higher order structure of chloroplastic 5S ribosomal RNA from spinach.
    Romby P, Westhof E, Toukifimpa R, Mache R, Ebel JP, Ehresmann C, Ehresmann B.
    Biochemistry; 1988 Jun 28; 27(13):4721-30. PubMed ID: 3167011
    [Abstract] [Full Text] [Related]

  • 16. Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs.
    Sponer J, Mokdad A, Sponer JE, Spacková N, Leszczynski J, Leontis NB.
    J Mol Biol; 2003 Jul 25; 330(5):967-78. PubMed ID: 12860120
    [Abstract] [Full Text] [Related]

  • 17. The lonepair triloop: a new motif in RNA structure.
    Lee JC, Cannone JJ, Gutell RR.
    J Mol Biol; 2003 Jan 03; 325(1):65-83. PubMed ID: 12473452
    [Abstract] [Full Text] [Related]

  • 18. Structure of an RNA duplex with an unusual G.C pair in wobble-like conformation at 1.6 A resolution.
    Perbandt M, Vallazza M, Lippmann C, Betzel C, Erdmann VA.
    Acta Crystallogr D Biol Crystallogr; 2001 Feb 03; 57(Pt 2):219-24. PubMed ID: 11173467
    [Abstract] [Full Text] [Related]

  • 19. [Characterization of 5S rRNA gene sequence and secondary structure in gymnosperms].
    Liu ZL, Zhang DM, Wang XR.
    Yi Chuan Xue Bao; 2003 Jan 03; 30(1):88-96. PubMed ID: 12812082
    [Abstract] [Full Text] [Related]

  • 20. Mutational and structural analysis of the RNA binding site for Escherichia coli ribosomal protein S7.
    Dragon F, Payant C, Brakier-Gingras L.
    J Mol Biol; 1994 Nov 18; 244(1):74-85. PubMed ID: 7525976
    [Abstract] [Full Text] [Related]

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