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Journal Abstract Search

373 related items for PubMed ID: 9876122

  • 1. Molecular dynamics simulations of solvated yeast tRNA(Asp).
    Auffinger P, Louise-May S, Westhof E.
    Biophys J; 1999 Jan; 76(1 Pt 1):50-64. PubMed ID: 9876122
    [Abstract] [Full Text] [Related]

  • 2. RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin.
    Auffinger P, Westhof E.
    J Mol Biol; 1997 Jun 13; 269(3):326-41. PubMed ID: 9199403
    [Abstract] [Full Text] [Related]

  • 3. Yeast aspartyl-tRNA synthetase residues interacting with tRNA(Asp) identity bases connectively contribute to tRNA(Asp) binding in the ground and transition-state complex and discriminate against non-cognate tRNAs.
    Eriani G, Gangloff J.
    J Mol Biol; 1999 Aug 27; 291(4):761-73. PubMed ID: 10452887
    [Abstract] [Full Text] [Related]

  • 4. Molecular dynamics of the anticodon domain of yeast tRNA(Phe): codon-anticodon interaction.
    Lahiri A, Nilsson L.
    Biophys J; 2000 Nov 27; 79(5):2276-89. PubMed ID: 11053108
    [Abstract] [Full Text] [Related]

  • 5. Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry.
    Wang B, Wilkinson KA, Weeks KM.
    Biochemistry; 2008 Mar 18; 47(11):3454-61. PubMed ID: 18290632
    [Abstract] [Full Text] [Related]

  • 6. Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs.
    Becker HF, Motorin Y, Sissler M, Florentz C, Grosjean H.
    J Mol Biol; 1997 Dec 12; 274(4):505-18. PubMed ID: 9417931
    [Abstract] [Full Text] [Related]

  • 7. The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain.
    Sauter C, Lorber B, Cavarelli J, Moras D, Giegé R.
    J Mol Biol; 2000 Jun 23; 299(5):1313-24. PubMed ID: 10873455
    [Abstract] [Full Text] [Related]

  • 8. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
    Csaszar K, Spacková N, Stefl R, Sponer J, Leontis NB.
    J Mol Biol; 2001 Nov 09; 313(5):1073-91. PubMed ID: 11700064
    [Abstract] [Full Text] [Related]

  • 9. Molecular modeling of the three-dimensional architecture of the RNA component of yeast RNase MRP.
    Schmitt ME.
    J Mol Biol; 1999 Oct 01; 292(4):827-36. PubMed ID: 10525408
    [Abstract] [Full Text] [Related]

  • 10. RNA solvation: a molecular dynamics simulation perspective.
    Auffinger P, Westhof E.
    Biopolymers; 1999 Oct 01; 56(4):266-74. PubMed ID: 11754340
    [Abstract] [Full Text] [Related]

  • 11. Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
    Misra VK, Draper DE.
    J Mol Biol; 2000 Jun 09; 299(3):813-25. PubMed ID: 10835286
    [Abstract] [Full Text] [Related]

  • 12. Crystal structure of glutamyl-queuosine tRNAAsp synthetase complexed with L-glutamate: structural elements mediating tRNA-independent activation of glutamate and glutamylation of tRNAAsp anticodon.
    Blaise M, Olieric V, Sauter C, Lorber B, Roy B, Karmakar S, Banerjee R, Becker HD, Kern D.
    J Mol Biol; 2008 Sep 19; 381(5):1224-37. PubMed ID: 18602926
    [Abstract] [Full Text] [Related]

  • 13. Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs.
    Felden B, Florentz C, Giegé R, Westhof E.
    J Mol Biol; 1994 Jan 14; 235(2):508-31. PubMed ID: 8289279
    [Abstract] [Full Text] [Related]

  • 14. Evaluation of uranyl photocleavage as a probe to monitor ion binding and flexibility in RNAs.
    Wittberger D, Berens C, Hammann C, Westhof E, Schroeder R.
    J Mol Biol; 2000 Jul 07; 300(2):339-52. PubMed ID: 10873469
    [Abstract] [Full Text] [Related]

  • 15. Molecular dynamics study of water penetration in staphylococcal nuclease.
    Damjanović A, García-Moreno B, Lattman EE, García AE.
    Proteins; 2005 Aug 15; 60(3):433-49. PubMed ID: 15971206
    [Abstract] [Full Text] [Related]

  • 16. Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms.
    Bahar I, Jernigan RL.
    J Mol Biol; 1998 Sep 04; 281(5):871-84. PubMed ID: 9719641
    [Abstract] [Full Text] [Related]

  • 17. A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.
    Koshlap KM, Guenther R, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 1999 Jul 06; 38(27):8647-56. PubMed ID: 10393540
    [Abstract] [Full Text] [Related]

  • 18. Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts.
    Sissler M, Giegé R, Florentz C.
    EMBO J; 1996 Sep 16; 15(18):5069-76. PubMed ID: 8890180
    [Abstract] [Full Text] [Related]

  • 19. Stability of nucleic acid base pairs in organic solvents: molecular dynamics, molecular dynamics/quenching, and correlated ab initio study.
    Zendlová L, Hobza P, Kabelác M.
    J Phys Chem B; 2007 Mar 15; 111(10):2591-609. PubMed ID: 17302446
    [Abstract] [Full Text] [Related]

  • 20. Structural specificity of nuclease from wheat chloroplasts stroma.
    Gabryszuk J, Keith G, Mońko M, Kuligowska E, Dirheimer G, Szarkowski JW, Przykorska A.
    Nucleic Acids Symp Ser; 1995 Mar 15; (33):115-9. PubMed ID: 8643343
    [Abstract] [Full Text] [Related]

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